RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 B4GALNT4Q76KP1 1039 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 RUBCNQ92622 972 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 DLEC1Q9Y238 1755 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 MYMKA6NI61 221 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 NR1D1P20393 614 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 RFC4P35249 363 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 TXKP42681 527 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 CNPY4Q8N129 248 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 CEP89Q96ST8 783 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 GDF3Q9NR23 364 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 BARHL2Q9NY43 387 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 USP21Q9UK80 565 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 STX8Q9UNK0 236 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 MEFVO15553 781 aaPredicted RBP24.69■■□□□ 1.54
TRIM28-202ENST00000341753 HDLBPQ00341 1268 aaKnown RBP24.69■■□□□ 1.54
TRIM28-202ENST00000341753 PDXDC1Q6P996 788 aa24.69■■□□□ 1.54
TRIM28-202ENST00000341753 FAM196AQ6ZSG2 479 aa24.69■■□□□ 1.54
TRIM28-202ENST00000341753 MAATS1Q7Z4T9 603 aa24.69■■□□□ 1.54
TRIM28-202ENST00000341753 KLHL7Q8IXQ5 586 aa24.69■■□□□ 1.54
TRIM28-202ENST00000341753 CUEDC2Q9H467 287 aa24.69■■□□□ 1.54
TRIM28-202ENST00000341753 FNTAP49354 379 aa24.69■■□□□ 1.54
TRIM28-202ENST00000341753 NAPAP54920 295 aa24.69■■□□□ 1.54
TRIM28-202ENST00000341753 SWT1Q5T5J6 900 aaKnown RBP24.69■■□□□ 1.54
TRIM28-202ENST00000341753 SAP30BPQ9UHR5 308 aaKnown RBP24.69■■□□□ 1.54
TRIM28-202ENST00000341753 EHHADHQ08426 723 aa24.68■■□□□ 1.54
TRIM28-202ENST00000341753 PAK2Q13177 524 aa24.68■■□□□ 1.54
TRIM28-202ENST00000341753 ASTE1Q2TB18 679 aaPredicted RBP24.68■■□□□ 1.54
TRIM28-202ENST00000341753 RC3H1Q5TC82 1133 aaKnown RBP24.68■■□□□ 1.54
TRIM28-202ENST00000341753 HGSNATQ68CP4 663 aa24.68■■□□□ 1.54
TRIM28-202ENST00000341753 KDM7AQ6ZMT4 941 aa24.68■■□□□ 1.54
TRIM28-202ENST00000341753 PRPF38AQ8NAV1 312 aaKnown RBP24.68■■□□□ 1.54
TRIM28-202ENST00000341753 ZNF473Q8WTR7 871 aaKnown RBP24.68■■□□□ 1.54
TRIM28-202ENST00000341753 TNFRSF8P28908 595 aa24.68■■□□□ 1.54
TRIM28-202ENST00000341753 PRPHP41219 470 aa24.68■■□□□ 1.54
TRIM28-202ENST00000341753 GRM4Q14833 912 aa24.68■■□□□ 1.54
TRIM28-202ENST00000341753 EPN3Q9H201 632 aa24.68■■□□□ 1.54
TRIM28-202ENST00000341753 VAT1LQ9HCJ6 419 aa24.68■■□□□ 1.54
TRIM28-202ENST00000341753 PJA2O43164 708 aa24.67■■□□□ 1.54
TRIM28-202ENST00000341753 TMED8Q6PL24 325 aaPredicted RBP24.67■■□□□ 1.54
TRIM28-202ENST00000341753 ARPP21Q9UBL0 812 aaPredicted RBP24.67■■□□□ 1.54
TRIM28-202ENST00000341753 KLRC1P26715 233 aa24.67■■□□□ 1.54
TRIM28-202ENST00000341753 AMPD3Q01432 767 aa24.67■■□□□ 1.54
TRIM28-202ENST00000341753 CEP85LQ5SZL2 805 aa24.67■■□□□ 1.54
TRIM28-202ENST00000341753 OR2W6PQ8NHA6 318 aa24.67■■□□□ 1.54
TRIM28-202ENST00000341753 PACSIN1Q9BY11 444 aa24.67■■□□□ 1.54
TRIM28-202ENST00000341753 BTAF1O14981 1849 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 LAD1O00515 517 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 TLR2O60603 784 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 KCNMA1Q12791 1236 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 PTGISQ16647 500 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 SV2BQ7L1I2 683 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 CCDC91Q7Z6B0 441 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 CCDC84Q86UT8 332 aaPredicted RBP24.66■■□□□ 1.54
TRIM28-202ENST00000341753 AK8Q96MA6 479 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP24.66■■□□□ 1.54
TRIM28-202ENST00000341753 MAGEF1Q9HAY2 307 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 PPANQ9NQ55 473 aaKnown RBP24.66■■□□□ 1.54
TRIM28-202ENST00000341753 ATP8A2Q9NTI2 1148 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 TNRC6CQ9HCJ0 1690 aaKnown RBP24.66■■□□□ 1.54
TRIM28-202ENST00000341753 IRS2Q9Y4H2 1338 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 PPP1R37O75864 691 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 IFT88Q13099 833 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 DNAAF5Q86Y56 855 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 TGFBRAP1Q8WUH2 860 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 CALML4Q96GE6 196 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 GOLPH3Q9H4A6 298 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 MKNK2Q9HBH9 465 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 BLOC1S4Q9NUP1 217 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 BIN2Q9UBW5 565 aaPredicted RBP24.66■■□□□ 1.54
TRIM28-202ENST00000341753 PLAAQ9Y263 795 aa24.66■■□□□ 1.54
TRIM28-202ENST00000341753 E7EVH7 732 aa24.65■■□□□ 1.54
TRIM28-202ENST00000341753 GRB10Q13322 594 aa24.65■■□□□ 1.54
TRIM28-202ENST00000341753 NONOQ15233 471 aaKnown RBP eCLIP24.65■■□□□ 1.54
TRIM28-202ENST00000341753 CCT8L2Q96SF2 557 aa24.65■■□□□ 1.54
TRIM28-202ENST00000341753 TMEM260Q9NX78 707 aa24.65■■□□□ 1.54
TRIM28-202ENST00000341753 RAD51CO43502 376 aa24.65■■□□□ 1.54
TRIM28-202ENST00000341753 LDHBP07195 334 aaKnown RBP24.65■■□□□ 1.54
TRIM28-202ENST00000341753 GLE1Q53GS7 698 aaKnown RBP24.65■■□□□ 1.54
TRIM28-202ENST00000341753 DAGLBQ8NCG7 672 aa24.65■■□□□ 1.54
TRIM28-202ENST00000341753 JPH2Q9BR39 696 aaPredicted RBP24.65■■□□□ 1.54
TRIM28-202ENST00000341753 CD248Q9HCU0 757 aa24.65■■□□□ 1.54
TRIM28-202ENST00000341753 SMCO2A6NFE2 343 aa24.64■■□□□ 1.54
TRIM28-202ENST00000341753 IBSPP21815 317 aaPredicted RBP24.64■■□□□ 1.54
TRIM28-202ENST00000341753 HLTFQ14527 1009 aaKnown RBP eCLIP24.64■■□□□ 1.54
TRIM28-202ENST00000341753 NLRP14Q86W24 1093 aa24.64■■□□□ 1.54
TRIM28-202ENST00000341753 MAPKAPK5Q8IW41 473 aa24.64■■□□□ 1.54
TRIM28-202ENST00000341753 MYCBPAPQ8TBZ2 947 aa24.64■■□□□ 1.54
TRIM28-202ENST00000341753 TBCKQ8TEA7 893 aa24.64■■□□□ 1.54
TRIM28-202ENST00000341753 TBC1D5Q92609 795 aa24.64■■□□□ 1.54
TRIM28-202ENST00000341753 ATP6V1G3Q96LB4 118 aa24.64■■□□□ 1.54
TRIM28-202ENST00000341753 LRRC4BQ9NT99 713 aa24.64■■□□□ 1.54
TRIM28-202ENST00000341753 BACH1O14867 736 aa24.64■■□□□ 1.53
TRIM28-202ENST00000341753 POLR2FP61218 127 aaKnown RBP24.64■■□□□ 1.53
TRIM28-202ENST00000341753 TRAPPC3LQ5T215 181 aa24.64■■□□□ 1.53
TRIM28-202ENST00000341753 LRRC55Q6ZSA7 311 aa24.64■■□□□ 1.53
TRIM28-202ENST00000341753 CABS1Q96KC9 395 aa24.64■■□□□ 1.53
TRIM28-202ENST00000341753 TSPY3P0CV98 308 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 TSPY8P0CW00 308 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 DGKHQ86XP1 1220 aa24.63■■□□□ 1.53
TRIM28-202ENST00000341753 POTEMA6NI47 508 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms