RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 USP17L6PQ6QN14 398 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 IPO4Q8TEX9 1081 aaKnown RBP11.19□□□□□ -0.62
USP54-201ENST00000339859 MIS12Q9H081 205 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 MROH8Q9H579 483 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 SMARCA1P28370 1054 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 CDC42EP1Q00587 391 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 CTTNQ14247 550 aaKnown RBP11.18□□□□□ -0.62
USP54-201ENST00000339859 SLFN12LQ6IEE8 588 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 RDH13Q8NBN7 331 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 ZC3H15Q8WU90 426 aaKnown RBP11.18□□□□□ -0.62
USP54-201ENST00000339859 NUCKS1Q9H1E3 243 aaKnown RBP11.18□□□□□ -0.62
USP54-201ENST00000339859 SLC9A2Q9UBY0 812 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 PRR12Q9ULL5 1215 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.18□□□□□ -0.62
USP54-201ENST00000339859 ADM5C9JUS6 153 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 WNT10BO00744 389 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 TFRCP02786 760 aaKnown RBP11.18□□□□□ -0.62
USP54-201ENST00000339859 CPT1AP50416 773 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 KIAA1841Q6NSI8 718 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 A0A1W2PQ27 194 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 A0A1W2PQ64 194 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 A0A1W2PQD8 194 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 TOB2Q14106 344 aaPredicted RBP11.18□□□□□ -0.62
USP54-201ENST00000339859 CATSPER4Q7RTX7 472 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 STAMQ92783 540 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 C2orf40Q9H1Z8 148 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 PARVGQ9HBI0 331 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 PRDM5Q9NQX1 630 aaPredicted RBP11.18□□□□□ -0.62
USP54-201ENST00000339859 STAM2O75886 525 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 PLA2G4BP0C869 781 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 KIF5AQ12840 1032 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 KIF18AQ8NI77 898 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 MRIQ9BWK5 157 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 GBP3Q9H0R5 595 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 VPS16Q9H269 839 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 IFNKQ9P0W0 207 aa11.18□□□□□ -0.62
USP54-201ENST00000339859 MEIS1O00470 390 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 INHBEP58166 350 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 FKBP1BP68106 108 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 NR5A1Q13285 461 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 XRRA1Q6P2D8 792 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 RNF180Q86T96 592 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 CLIC6Q96NY7 704 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 EPB41L4AQ9HCS5 686 aaPredicted RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 JADE2Q9NQC1 790 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 RASAL2Q9UJF2 1139 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 FAM184BQ9ULE4 1060 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 PCDHA7Q9UN72 937 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 KRT86O43790 486 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 SAMD3Q8N6K7 520 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 FAM81BQ96LP2 452 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 RIOK1Q9BRS2 568 aaKnown RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 CCDC94Q9BW85 323 aaPredicted RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 MAP3K20Q9NYL2 800 aaKnown RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 PSMD2Q13200 908 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 ZRSR2Q15696 482 aaKnown RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 GMCL1P1Q8NEA9 526 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 AKR1B15C9JRZ8 316 aaPredicted RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 P4HBP07237 508 aaKnown RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 PTGS1P23219 599 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 CCDC84Q86UT8 332 aaPredicted RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 TXNRD3Q86VQ6 643 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 ANKRD13CQ8N6S4 541 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 NLRP4Q96MN2 994 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 SRRTQ9BXP5 876 aaKnown RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 CPVLQ9H3G5 476 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 SSX2IPQ9Y2D8 614 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 SRPRBQ9Y5M8 271 aaKnown RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 SRGAP2CP0DJJ0 459 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 CKAP4Q07065 602 aaKnown RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 BAATQ14032 418 aaPredicted RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 KAZALD1Q96I82 304 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 GCOM2Q9BZD3 368 aaPredicted RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 RPF1Q9H9Y2 349 aaKnown RBP11.17□□□□□ -0.62
USP54-201ENST00000339859 SHPRHQ149N8 1683 aa11.17□□□□□ -0.62
USP54-201ENST00000339859 ZBBXA8MT70 800 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 PDHBP11177 359 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 PSMC5P62195 406 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 PPATQ06203 517 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 KIAA0753Q2KHM9 967 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 CRY2Q49AN0 593 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 TTBK2Q6IQ55 1244 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 ARMCX3Q9UH62 379 aaPredicted RBP11.16□□□□□ -0.62
USP54-201ENST00000339859 CCDC175P0C221 793 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 SNX25Q9H3E2 840 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 JPH1Q9HDC5 661 aaPredicted RBP11.16□□□□□ -0.62
USP54-201ENST00000339859 DLATP10515 647 aaKnown RBP11.16□□□□□ -0.62
USP54-201ENST00000339859 ADAM9Q13443 819 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 REM2Q8IYK8 340 aaPredicted RBP11.16□□□□□ -0.62
USP54-201ENST00000339859 BANK1Q8NDB2 785 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 PPP1R16BQ96T49 567 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 SLC39A2Q9NP94 309 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 DISC1Q9NRI5 854 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 HESX1Q9UBX0 185 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 PDHXO00330 501 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 DAPK3O43293 454 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 PSMC2P35998 433 aaKnown RBP11.16□□□□□ -0.62
USP54-201ENST00000339859 MYO1EQ12965 1108 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 MORC3Q14149 939 aa11.16□□□□□ -0.62
USP54-201ENST00000339859 MAP9Q49MG5 647 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms