RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 HEATR3Q7Z4Q2 680 aa15.13■□□□□ 0.01
SYNE3-201ENST00000334258 VCPKMTQ9H867 229 aa15.13■□□□□ 0.01
SYNE3-201ENST00000334258 SLC24A3Q9HC58 644 aa15.13■□□□□ 0.01
SYNE3-201ENST00000334258 HMGB1P1B2RPK0 211 aaPredicted RBP15.13■□□□□ 0.01
SYNE3-201ENST00000334258 GCOM1H8Y6P7 765 aaPredicted RBP15.13■□□□□ 0.01
SYNE3-201ENST00000334258 PALMO75781 387 aa15.13■□□□□ 0.01
SYNE3-201ENST00000334258 MYZAPP0CAP1 466 aa15.13■□□□□ 0.01
SYNE3-201ENST00000334258 N4BP2L2Q92802 583 aaPredicted RBP15.13■□□□□ 0.01
SYNE3-201ENST00000334258 SETDB2Q96T68 719 aa15.13■□□□□ 0.01
SYNE3-201ENST00000334258 TRIM9Q9C026 710 aa15.13■□□□□ 0.01
SYNE3-201ENST00000334258 ODF2LQ9ULJ1 636 aa15.13■□□□□ 0.01
SYNE3-201ENST00000334258 RFC4P35249 363 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 SMTNP53814 917 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 OR2W6PQ8NHA6 318 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 CASKIN2Q8WXE0 1202 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 SLC40A1Q9NP59 571 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 TSKSQ9UJT2 592 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 PCDHA4Q9UN74 947 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.12■□□□□ 0.01
SYNE3-201ENST00000334258 RTCBQ9Y3I0 505 aaKnown RBP15.12■□□□□ 0.01
SYNE3-201ENST00000334258 AMPD3Q01432 767 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 DDR1Q08345 913 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 CCDC152Q4G0S7 254 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 CNNM4Q6P4Q7 775 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 TAF4BQ92750 862 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 CYFIP2Q96F07 1278 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 LUC7LQ9NQ29 371 aaKnown RBP15.12■□□□□ 0.01
SYNE3-201ENST00000334258 ANAPC4Q9UJX5 808 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 LAMB4A4D0S4 1761 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 EVX2Q03828 476 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 PTPROQ16827 1216 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 TXNRD1Q16881 649 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 LETM2Q2VYF4 491 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 YTHDF3Q7Z739 585 aaKnown RBP15.12■□□□□ 0.01
SYNE3-201ENST00000334258 GDF3Q9NR23 364 aa15.12■□□□□ 0.01
SYNE3-201ENST00000334258 TAF1P21675 1872 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 DYMQ7RTS9 669 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 CCDC155Q8N6L0 562 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 WHAMMQ8TF30 809 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 IQCDQ96DY2 449 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 CCSER1Q9C0I3 900 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 ATXN2Q99700 1313 aaKnown RBP15.11■□□□□ 0.01
SYNE3-201ENST00000334258 TNFRSF8P28908 595 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 TNNC1P63316 161 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 E2F5Q15329 346 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 ZSCAN29Q8IWY8 852 aaPredicted RBP15.11■□□□□ 0.01
SYNE3-201ENST00000334258 RNF14Q9UBS8 474 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 ECM2O94769 699 aaPredicted RBP15.11■□□□□ 0.01
SYNE3-201ENST00000334258 TMOD1P28289 359 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 CTNNA1P35221 906 aaKnown RBP15.11■□□□□ 0.01
SYNE3-201ENST00000334258 SF3A3Q12874 501 aaKnown RBP eCLIP15.11■□□□□ 0.016e-9■■■■■ 59.3
SYNE3-201ENST00000334258 KCTD19Q17RG1 926 aaPredicted RBP15.11■□□□□ 0.01
SYNE3-201ENST00000334258 SLC9C1Q4G0N8 1177 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 PROCA1Q8NCQ7 364 aaPredicted RBP15.11■□□□□ 0.01
SYNE3-201ENST00000334258 SEMA6BQ9H3T3 888 aa15.11■□□□□ 0.01
SYNE3-201ENST00000334258 GMNCA6NCL1 334 aa15.1■□□□□ 0.01
SYNE3-201ENST00000334258 HNRNPH3P31942 346 aaKnown RBP15.1■□□□□ 0.01
SYNE3-201ENST00000334258 ELF1P32519 619 aa15.1■□□□□ 0.01
SYNE3-201ENST00000334258 TECP42680 631 aa15.1■□□□□ 0.01
SYNE3-201ENST00000334258 SNCBQ16143 134 aa15.1■□□□□ 0.01
SYNE3-201ENST00000334258 MAN2A1Q16706 1144 aa15.1■□□□□ 0.01
SYNE3-201ENST00000334258 LRRC15Q8TF66 581 aa15.1■□□□□ 0.01
SYNE3-201ENST00000334258 UBLCP1Q8WVY7 318 aaPredicted RBP15.1■□□□□ 0.01
SYNE3-201ENST00000334258 VEZTQ9HBM0 779 aa15.1■□□□□ 0.01
SYNE3-201ENST00000334258 ZNF652Q9Y2D9 606 aa15.1■□□□□ 0.01
SYNE3-201ENST00000334258 SIK3Q9Y2K2 1263 aa15.1■□□□□ 0.01
SYNE3-201ENST00000334258 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.1■□□□□ 0.01
SYNE3-201ENST00000334258 PPP1R12AO14974 1030 aaPredicted RBP15.1■□□□□ 0.01
SYNE3-201ENST00000334258 RAD51CO43502 376 aa15.1■□□□□ 0.01
SYNE3-201ENST00000334258 ITGB3BPQ13352 177 aaPredicted RBP15.1■□□□□ 0.01
SYNE3-201ENST00000334258 RNF10Q8N5U6 811 aaKnown RBP15.1■□□□□ 0.01
SYNE3-201ENST00000334258 PIK3R5Q8WYR1 880 aa15.1■□□□□ 0.01
SYNE3-201ENST00000334258 CCNT1O60563 726 aaKnown RBP15.09■□□□□ 0.01
SYNE3-201ENST00000334258 FGFR1OPO95684 399 aaKnown RBP15.09■□□□□ 0.01
SYNE3-201ENST00000334258 KIAA0753Q2KHM9 967 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 CPLX4Q7Z7G2 160 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 A1CFQ9NQ94 594 aaKnown RBP15.09■□□□□ 0.01
SYNE3-201ENST00000334258 KCNK3O14649 394 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 EZRP15311 586 aaKnown RBP15.09■□□□□ 0.01
SYNE3-201ENST00000334258 PPP1R2P41236 205 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 CALML4Q96GE6 196 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.09■□□□□ 0.01
SYNE3-201ENST00000334258 HAUS2Q9NVX0 235 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 NUP188Q5SRE5 1749 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 PDHBP11177 359 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 CDC37Q16543 378 aaPredicted RBP15.09■□□□□ 0.01
SYNE3-201ENST00000334258 PPP4R3AQ6IN85 833 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 DDX42Q86XP3 938 aaKnown RBP eCLIP15.09■□□□□ 0.01
SYNE3-201ENST00000334258 PARP9Q8IXQ6 854 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 STAG2Q8N3U4 1231 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 KIAA0895Q8NCT3 520 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 TBC1D5Q92609 795 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 CDK5RAP3Q96JB5 506 aa15.09■□□□□ 0.01
SYNE3-201ENST00000334258 MYH6P13533 1939 aa15.08■□□□□ 0
SYNE3-201ENST00000334258 KLRC1P26715 233 aa15.08■□□□□ 0
SYNE3-201ENST00000334258 SFMBT2Q5VUG0 894 aa15.08■□□□□ 0
SYNE3-201ENST00000334258 TXNRD3Q86VQ6 643 aa15.08■□□□□ 0
SYNE3-201ENST00000334258 CACNA2D3Q8IZS8 1091 aa15.08■□□□□ 0
SYNE3-201ENST00000334258 RIOK1Q9BRS2 568 aaKnown RBP15.08■□□□□ 0
SYNE3-201ENST00000334258 CUEDC2Q9H467 287 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms