RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SENP6Q9GZR1 1112 aaPredicted RBP18.13■□□□□ 0.49
CCDC28A-201ENST00000332797 BRMS1Q9HCU9 246 aa18.13■□□□□ 0.49
CCDC28A-201ENST00000332797 PHF24Q9UPV7 400 aa18.13■□□□□ 0.49
CCDC28A-201ENST00000332797 SPATA31C2B4DYI2 1134 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 GGPS1O95749 300 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 TGFB3P10600 412 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 ICAM3P32942 547 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 KRT2P35908 639 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 CPT1AP50416 773 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 ACLYP53396 1101 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 NKX3-2P78367 333 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 SP2Q02086 613 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 MLLT1Q03111 559 aaPredicted RBP18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 MTMR1Q13613 665 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 KRT40Q6A162 431 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 CCSAPQ6IQ19 270 aaPredicted RBP18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 DHX37Q8IY37 1157 aaKnown RBP18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 OXER1Q8TDS5 423 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 CRYGNQ8WXF5 182 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 C8orf76Q96K31 380 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 MXRA8Q9BRK3 442 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 JADE2Q9NQC1 790 aa18.12■□□□□ 0.49
CCDC28A-201ENST00000332797 MKI67P46013 3256 aaKnown RBP18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 CCDC194A0A1B0GVG4 234 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 A0A1W2PQ45 241 aaPredicted RBP18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 A0A1W2PQY0 241 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 MOXD2PA6NHM9 499 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 ZEB2O60315 1214 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 MMP1P03956 469 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 ASGR1P07306 291 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 CYP3A4P08684 503 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 GUCY1B3Q02153 619 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 CEP55Q53EZ4 464 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 BRDTQ58F21 947 aaPredicted RBP18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 KRT25Q7Z3Z0 450 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 CYP2W1Q8TAV3 490 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 TBCKQ8TEA7 893 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 CDHR1Q96JP9 859 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 PKD2L1Q9P0L9 805 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 MYH7BA7E2Y1 1941 aa18.11■□□□□ 0.49
CCDC28A-201ENST00000332797 LAMC2Q13753 1193 aa18.1■□□□□ 0.49
CCDC28A-201ENST00000332797 NONOQ15233 471 aaKnown RBP eCLIP18.1■□□□□ 0.49
CCDC28A-201ENST00000332797 CELF3Q5SZQ8 465 aaKnown RBP18.1■□□□□ 0.49
CCDC28A-201ENST00000332797 AFG1LQ8WV93 481 aa18.1■□□□□ 0.49
CCDC28A-201ENST00000332797 HTATIP2Q9BUP3 242 aa18.1■□□□□ 0.49
CCDC28A-201ENST00000332797 MLXIPQ9HAP2 919 aa18.1■□□□□ 0.49
CCDC28A-201ENST00000332797 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.1■□□□□ 0.49
CCDC28A-201ENST00000332797 FAM86B1E9PN63 330 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 MYL3P08590 195 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 FAM86B2P0C5J1 330 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 GJB2P29033 226 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 ATN1P54259 1190 aaPredicted RBP18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 NR5A1Q13285 461 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 NEDD9Q14511 834 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 MYSM1Q5VVJ2 828 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 CYFIP1Q7L576 1253 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 DIS3L2Q8IYB7 885 aaKnown RBP18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 EMID1Q96A84 441 aaPredicted RBP18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 SPATA33Q96N06 139 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 BCAS3Q9H6U6 928 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 SMC3Q9UQE7 1217 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 KIF3AQ9Y496 699 aa18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 TNRC18O15417 2968 aaPredicted RBP18.09■□□□□ 0.49
CCDC28A-201ENST00000332797 A6NJR5 290 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 K7ELQ4 463 aaPredicted RBP18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 MEIS1O00470 390 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 MMP3P08254 477 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 ARP10275 920 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 CUL4AQ13619 759 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 SAFBQ15424 915 aaKnown RBP eCLIP18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 INF2Q27J81 1249 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 CXCL17Q6UXB2 119 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 PIK3AP1Q6ZUJ8 805 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 PLA2G4DQ86XP0 818 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 VTI1AQ96AJ9 217 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 GLT1D1Q96MS3 346 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 SENP7Q9BQF6 1050 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 STARD7Q9NQZ5 370 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 KCNH7Q9NS40 1196 aa18.08■□□□□ 0.49
CCDC28A-201ENST00000332797 BTBD18B2RXH4 712 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 MAFGO15525 162 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 ATP9AO75110 1047 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 KCNA2P16389 499 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 USP11P51784 963 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 LRRC26Q2I0M4 334 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 NIPA1Q7RTP0 329 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 HSCBQ8IWL3 235 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 FBXO18Q8NFZ0 1043 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 PPTC7Q8NI37 304 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 SNX21Q969T3 373 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 DOCK5Q9H7D0 1870 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 POLR3EQ9NVU0 708 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 IGLV3-22A0A075B6J6 115 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 FAM205CA6NFA0 338 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 CIITAP33076 1130 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 SETQ01105 290 aaPredicted RBP18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 SP4Q02446 784 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 HSDL1Q3SXM5 330 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 PRR16Q569H4 304 aa18.07■□□□□ 0.48
CCDC28A-201ENST00000332797 EARS2Q5JPH6 523 aaKnown RBP18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms