RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 SETQ01105 290 aaPredicted RBP11.61□□□□□ -0.55
COL3A1-202ENST00000317840 SBK1Q52WX2 424 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 LARGE2Q8N3Y3 721 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 OGFOD1Q8N543 542 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 TBC1D5Q92609 795 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 DDX12PQ92771 950 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 CCDC43Q96MW1 224 aaKnown RBP11.61□□□□□ -0.55
COL3A1-202ENST00000317840 KRT12Q99456 494 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 LRRC27Q9C0I9 530 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 SEPT11Q9NVA2 429 aaKnown RBP11.61□□□□□ -0.55
COL3A1-202ENST00000317840 ADAMTS1Q9UHI8 967 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 PLAGL2Q9UPG8 496 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 SCAF8Q9UPN6 1271 aaKnown RBP11.61□□□□□ -0.55
COL3A1-202ENST00000317840 LAMB4A4D0S4 1761 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 MYH7P12883 1935 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 CLRN2A0PK11 232 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 MYMKA6NI61 221 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 C21orf2O43822 256 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 RAD17O75943 681 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 ALDH1B1P30837 517 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 ZNF76P36508 570 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 MAGEA9P43362 315 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 CDK8P49336 464 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 EPHB4P54760 987 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 PDE4CQ08493 712 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 GJA10Q969M2 543 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 SH2D4AQ9H788 454 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 ATF5Q9Y2D1 282 aaPredicted RBP11.6□□□□□ -0.55
COL3A1-202ENST00000317840 ALS2Q96Q42 1657 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 CNTNAP4Q9C0A0 1308 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 EPHB6O15197 1021 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 PDE6BP35913 854 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 MNAT1P51948 309 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 PDCLQ13371 301 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 MEA1Q16626 185 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 FAM26FQ5R3K3 315 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 TMED8Q6PL24 325 aaPredicted RBP11.6□□□□□ -0.55
COL3A1-202ENST00000317840 SEMA6BQ9H3T3 888 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 USP17L5A8MUK1 530 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 PRPHP41219 470 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 PRPF4BQ13523 1007 aaKnown RBP11.6□□□□□ -0.55
COL3A1-202ENST00000317840 UBE2SQ16763 222 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 DCAF17Q5H9S7 520 aaPredicted RBP11.6□□□□□ -0.55
COL3A1-202ENST00000317840 CERS3Q8IU89 383 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 SH2D3CQ8N5H7 860 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 KIAA0895Q8NCT3 520 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 CEP95Q96GE4 821 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 ERGIC2Q96RQ1 377 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 EHD4Q9H223 541 aa11.6□□□□□ -0.55
COL3A1-202ENST00000317840 ERLIN2O94905 339 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 IBSPP21815 317 aaPredicted RBP11.59□□□□□ -0.55
COL3A1-202ENST00000317840 UNC13DQ70J99 1090 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 C7orf25Q9BPX7 421 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 PCDHA12Q9UN75 941 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 TCP10L2B9ZVM9 353 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 GOLGA8KD6RF30 607 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 KCNK3O14649 394 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 CEP104O60308 925 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 KRT14P02533 472 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 SLC16A2P36021 539 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 FKBP3Q00688 224 aaKnown RBP11.59□□□□□ -0.55
COL3A1-202ENST00000317840 PAK2Q13177 524 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 GRIK5Q16478 980 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 OTUD6BQ8N6M0 293 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 FAM133AQ8N9E0 248 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 IQCDQ96DY2 449 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 RBM12Q9NTZ6 932 aaKnown RBP11.59□□□□□ -0.55
COL3A1-202ENST00000317840 PANK4Q9NVE7 773 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 FGRP09769 529 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 INPP5BP32019 993 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 ZNF772Q68DY9 489 aaPredicted RBP11.59□□□□□ -0.55
COL3A1-202ENST00000317840 TEKT1Q969V4 418 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 ZMYND12Q9H0C1 365 aa11.59□□□□□ -0.55
COL3A1-202ENST00000317840 NKRFO15226 690 aaKnown RBP eCLIP11.58□□□□□ -0.56
COL3A1-202ENST00000317840 PALMO75781 387 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 IRAK1P51617 712 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 NNTQ13423 1086 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 CCDC65Q8IXS2 484 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 TBC1D16Q8TBP0 767 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 GJA3Q9Y6H8 435 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 ZNF263O14978 683 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 RASA1P20936 1047 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 TNNC1P63316 161 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 CREG2Q8IUH2 290 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 TBC1D22AQ8WUA7 517 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 STK17AQ9UEE5 414 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 TCEAL9Q9UHQ7 104 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 KIAA1024Q9UPX6 916 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 COL4A3BPQ9Y5P4 624 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 LRRC63Q05C16 580 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 ASIC2Q16515 512 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 MIIPQ5JXC2 388 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 CEP85LQ5SZL2 805 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 EMBQ6PCB8 327 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 COL23A1Q86Y22 540 aaPredicted RBP11.58□□□□□ -0.56
COL3A1-202ENST00000317840 SPICE1Q8N0Z3 855 aa11.58□□□□□ -0.56
COL3A1-202ENST00000317840 GUF1Q8N442 669 aaKnown RBP11.58□□□□□ -0.56
COL3A1-202ENST00000317840 DDX25Q9UHL0 483 aaKnown RBP11.58□□□□□ -0.56
COL3A1-202ENST00000317840 CETN3O15182 167 aa11.57□□□□□ -0.56
COL3A1-202ENST00000317840 ADAM9Q13443 819 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms