RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 ITPK1Q13572 414 aa14.75□□□□□ -0.05
RFFL-201ENST00000315249 STRIP1Q5VSL9 837 aa14.75□□□□□ -0.05
RFFL-201ENST00000315249 RSBN1LQ6PCB5 846 aaPredicted RBP14.75□□□□□ -0.05
RFFL-201ENST00000315249 USP17L6PQ6QN14 398 aa14.75□□□□□ -0.05
RFFL-201ENST00000315249 TAB3Q8N5C8 712 aaPredicted RBP14.75□□□□□ -0.05
RFFL-201ENST00000315249 CCDC110Q8TBZ0 833 aa14.75□□□□□ -0.05
RFFL-201ENST00000315249 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.75□□□□□ -0.05
RFFL-201ENST00000315249 hCG_1984214I3L0E3 225 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 ZBTB5O15062 677 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 RCSD1Q6JBY9 416 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 ZNF713Q8N859 430 aaPredicted RBP14.74□□□□□ -0.05
RFFL-201ENST00000315249 NSUN6Q8TEA1 469 aaKnown RBP14.74□□□□□ -0.05
RFFL-201ENST00000315249 SPATA33Q96N06 139 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 CCDC94Q9BW85 323 aaPredicted RBP14.74□□□□□ -0.05
RFFL-201ENST00000315249 UNC13BO14795 1591 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 DIP2CQ9Y2E4 1556 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 CD58P19256 250 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 CMA1P23946 247 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 STAT3P40763 770 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 CUL4BQ13620 913 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 CEP128Q6ZU80 1094 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 SLC4A1P02730 911 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 MMP1P03956 469 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 TRAPPC10P48553 1259 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 C1orf228Q6PIY5 440 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 DCP1AQ9NPI6 582 aaPredicted RBP14.74□□□□□ -0.05
RFFL-201ENST00000315249 ARHGEF37A1IGU5 675 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 BNIP3LO60238 219 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 SMYD4Q8IYR2 804 aaPredicted RBP14.74□□□□□ -0.05
RFFL-201ENST00000315249 AIFM3Q96NN9 605 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 SMC6Q96SB8 1091 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 SLC12A6Q9UHW9 1150 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 MTMR6Q9Y217 621 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 PLA2G4BP0C869 781 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 ZFYVE28Q9HCC9 887 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 GDAQ9Y2T3 454 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 GOLGA8IPA6NC78 632 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 GOLGA8JA6NMD2 632 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 ALDH3A1P30838 453 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 GTF2F1P35269 517 aaKnown RBP eCLIP14.74□□□□□ -0.05
RFFL-201ENST00000315249 PDZD4Q76G19 769 aaPredicted RBP14.74□□□□□ -0.05
RFFL-201ENST00000315249 SAMD7Q7Z3H4 446 aa14.74□□□□□ -0.05
RFFL-201ENST00000315249 ADAT2Q7Z6V5 191 aaKnown RBP14.74□□□□□ -0.05
RFFL-201ENST00000315249 PPRC1Q5VV67 1664 aaKnown RBP14.73□□□□□ -0.05
RFFL-201ENST00000315249 VPS41P49754 854 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 SNAPC2Q13487 334 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 FAM186BQ8IYM0 893 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 PRPF3O43395 683 aaKnown RBP14.73□□□□□ -0.05
RFFL-201ENST00000315249 PRPF38AQ8NAV1 312 aaKnown RBP14.73□□□□□ -0.05
RFFL-201ENST00000315249 RNF139Q8WU17 664 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 PIDD1Q9HB75 910 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 HERC5Q9UII4 1024 aaKnown RBP14.73□□□□□ -0.05
RFFL-201ENST00000315249 NSFP46459 744 aaKnown RBP14.73□□□□□ -0.05
RFFL-201ENST00000315249 MFAP3P55082 362 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 PPP2R3AQ06190 1150 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 LONRF2Q1L5Z9 754 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 RHPN2Q8IUC4 686 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 TCP11Q8WWU5 503 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 TMEM206Q9H813 350 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 SLC38A10Q9HBR0 1119 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 NOC2LQ9Y3T9 749 aaKnown RBP14.73□□□□□ -0.05
RFFL-201ENST00000315249 TTBK2Q6IQ55 1244 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 STAG1Q8WVM7 1258 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 MSTO1Q9BUK6 570 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 GMNNO75496 209 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 FOXO4P98177 505 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 THNSL1Q8IYQ7 743 aa14.73□□□□□ -0.05
RFFL-201ENST00000315249 BUB1O43683 1085 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 URGCPQ8TCY9 931 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 ZNF653Q96CK0 615 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 CNOT6LQ96LI5 555 aaKnown RBP14.72□□□□□ -0.05
RFFL-201ENST00000315249 RBSNQ9H1K0 784 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 ACAD9Q9H845 621 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 NSUN7Q8NE18 718 aaKnown RBP14.72□□□□□ -0.05
RFFL-201ENST00000315249 C9orf131Q5VYM1 1079 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.72□□□□□ -0.05
RFFL-201ENST00000315249 NKIRAS1Q9NYS0 192 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 NEDD4P46934 1319 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 GOLGA8SH3BPF8 625 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 LMNB1P20700 586 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 ITSN1Q15811 1721 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 OR6J1Q8NGC5 347 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 HAUS1Q96CS2 278 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 PRDM10Q9NQV6 1147 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 CYP2B6P20813 491 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 ZNF75DP51815 510 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 HEXIM2Q96MH2 286 aaKnown RBP14.72□□□□□ -0.05
RFFL-201ENST00000315249 XPO4Q9C0E2 1151 aaKnown RBP14.72□□□□□ -0.05
RFFL-201ENST00000315249 MYOZ2Q9NPC6 264 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 ATP8B3O60423 1300 aa14.72□□□□□ -0.05
RFFL-201ENST00000315249 DGKHQ86XP1 1220 aa14.71□□□□□ -0.05
RFFL-201ENST00000315249 ANKS4BQ8N8V4 417 aa14.71□□□□□ -0.05
RFFL-201ENST00000315249 KBTBD13C9JR72 458 aa14.71□□□□□ -0.05
RFFL-201ENST00000315249 PLCG1P19174 1290 aa14.71□□□□□ -0.05
RFFL-201ENST00000315249 ADGRF4Q8IZF3 695 aa14.71□□□□□ -0.05
RFFL-201ENST00000315249 VPS52Q8N1B4 723 aa14.71□□□□□ -0.05
RFFL-201ENST00000315249 ELMOD1Q8N336 334 aa14.71□□□□□ -0.05
RFFL-201ENST00000315249 SAT1P21673 171 aa14.71□□□□□ -0.05
RFFL-201ENST00000315249 DIP2AQ14689 1571 aa14.71□□□□□ -0.05
RFFL-201ENST00000315249 CEP170BQ9Y4F5 1589 aaPredicted RBP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms