RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 GUCY1A3Q02108 690 aa14.83□□□□□ -0.03
SKA3-202ENST00000314759 APBA1Q02410 837 aa14.83□□□□□ -0.03
SKA3-202ENST00000314759 PPARDQ03181 441 aa14.83□□□□□ -0.03
SKA3-202ENST00000314759 CLEC4GQ6UXB4 293 aa14.83□□□□□ -0.03
SKA3-202ENST00000314759 BICDL1Q6ZP65 573 aa14.83□□□□□ -0.03
SKA3-202ENST00000314759 OTUD6BQ8N6M0 293 aa14.83□□□□□ -0.03
SKA3-202ENST00000314759 PIK3R5Q8WYR1 880 aa14.83□□□□□ -0.03
SKA3-202ENST00000314759 RNPC3Q96LT9 517 aaKnown RBP14.83□□□□□ -0.03
SKA3-202ENST00000314759 MTMR9Q96QG7 549 aa14.83□□□□□ -0.03
SKA3-202ENST00000314759 CD248Q9HCU0 757 aa14.83□□□□□ -0.03
SKA3-202ENST00000314759 TSKSQ9UJT2 592 aa14.83□□□□□ -0.03
SKA3-202ENST00000314759 A6NNZ2 444 aa14.83□□□□□ -0.04
SKA3-202ENST00000314759 PALMO75781 387 aa14.83□□□□□ -0.04
SKA3-202ENST00000314759 MMP14P50281 582 aa14.83□□□□□ -0.04
SKA3-202ENST00000314759 TUBB8Q3ZCM7 444 aa14.83□□□□□ -0.04
SKA3-202ENST00000314759 CFAP58Q5T655 872 aa14.83□□□□□ -0.04
SKA3-202ENST00000314759 EDEM3Q9BZQ6 932 aa14.83□□□□□ -0.04
SKA3-202ENST00000314759 TANGO6Q9C0B7 1094 aa14.83□□□□□ -0.04
SKA3-202ENST00000314759 TMEM260Q9NX78 707 aa14.83□□□□□ -0.04
SKA3-202ENST00000314759 RNF14Q9UBS8 474 aa14.83□□□□□ -0.04
SKA3-202ENST00000314759 STK17AQ9UEE5 414 aa14.83□□□□□ -0.04
SKA3-202ENST00000314759 ROBO3Q96MS0 1386 aa14.83□□□□□ -0.04
SKA3-202ENST00000314759 H0YHG0 523 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 NOL4O94818 638 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 FTCDO95954 541 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 RASA1P20936 1047 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 NT5C2P49902 561 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 USP17L2Q6R6M4 530 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 NUDT12Q9BQG2 462 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 VAT1LQ9HCJ6 419 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 MEFVO15553 781 aaPredicted RBP14.82□□□□□ -0.04
SKA3-202ENST00000314759 GUCY2FP51841 1108 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 EHHADHQ08426 723 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 TRADDQ15628 312 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 SEC24CP53992 1094 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 PAK2Q13177 524 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 CALCRLQ16602 461 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 SLC9C1Q4G0N8 1177 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 KDM7AQ6ZMT4 941 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 KCNK18Q7Z418 384 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 TGFBRAP1Q8WUH2 860 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 DDX12PQ92771 950 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 CABS1Q96KC9 395 aa14.82□□□□□ -0.04
SKA3-202ENST00000314759 POTEMA6NI47 508 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 SLC37A4O43826 429 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 KLRC1P26715 233 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 USP8P40818 1118 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 DIXDC1Q155Q3 683 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 NAB2Q15742 525 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 FAM83BQ5T0W9 1011 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 SOGA3Q5TF21 947 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 B4GALNT4Q76KP1 1039 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 REXO1Q8N1G1 1221 aaKnown RBP14.81□□□□□ -0.04
SKA3-202ENST00000314759 CASKIN2Q8WXE0 1202 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 RAD54LQ92698 747 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 CDK5RAP3Q96JB5 506 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 KRT12Q99456 494 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 CEP72Q9P209 647 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 PACSIN2Q9UNF0 486 aaPredicted RBP14.81□□□□□ -0.04
SKA3-202ENST00000314759 EDIL3O43854 480 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 KIAA0754O94854 1291 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 SERPING1P05155 500 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 LSP1P33241 339 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 FXR2P51116 673 aaKnown RBP eCLIP14.81□□□□□ -0.04
SKA3-202ENST00000314759 RNASE9P60153 205 aaKnown RBP14.81□□□□□ -0.04
SKA3-202ENST00000314759 SFMBT2Q5VUG0 894 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 NAA35Q5VZE5 725 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 SPTY2D1Q68D10 685 aaPredicted RBP14.81□□□□□ -0.04
SKA3-202ENST00000314759 MREGQ8N565 214 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 PIGSQ96S52 555 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 RIC8AQ9NPQ8 531 aa14.81□□□□□ -0.04
SKA3-202ENST00000314759 SAP30BPQ9UHR5 308 aaKnown RBP14.81□□□□□ -0.04
SKA3-202ENST00000314759 FSBPO95073 299 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 SLC10A5Q5PT55 438 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 EMC10Q5UCC4 262 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 TDP2O95551 362 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 POLR2FP61218 127 aaKnown RBP14.8□□□□□ -0.04
SKA3-202ENST00000314759 ORC2Q13416 577 aaPredicted RBP14.8□□□□□ -0.04
SKA3-202ENST00000314759 GRIK5Q16478 980 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 MEI1Q5TIA1 1274 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 ARHGAP27Q6ZUM4 889 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 CD302Q8IX05 232 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 TBC1D5Q92609 795 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 SYN2Q92777 582 aaPredicted RBP14.8□□□□□ -0.04
SKA3-202ENST00000314759 INPP4AQ96PE3 977 aaPredicted RBP14.8□□□□□ -0.04
SKA3-202ENST00000314759 TSG101Q99816 390 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 ANKRD2Q9GZV1 360 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 SEC63Q9UGP8 760 aaKnown RBP14.8□□□□□ -0.04
SKA3-202ENST00000314759 COL4A3BPQ9Y5P4 624 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 CCDC88AQ3V6T2 1871 aa14.8□□□□□ -0.04
SKA3-202ENST00000314759 LDHBP07195 334 aaKnown RBP14.79□□□□□ -0.04
SKA3-202ENST00000314759 CCDC172P0C7W6 258 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 CDC37Q16543 378 aaPredicted RBP14.79□□□□□ -0.04
SKA3-202ENST00000314759 ZCWPW2Q504Y3 356 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 EP400NLQ6ZTU2 488 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 MAPKAPK5Q8IW41 473 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 EPN3Q9H201 632 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 ATP6V0A2Q9Y487 856 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 PCDHGC5Q9Y5F6 944 aa14.79□□□□□ -0.04
SKA3-202ENST00000314759 A0A087X0T9 212 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms