RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 LRRC41Q15345 812 aa18.81■□□□□ 0.6
SYNPO-201ENST00000307662 ZNF449Q6P9G9 518 aa18.81■□□□□ 0.6
SYNPO-201ENST00000307662 AP1M1Q9BXS5 423 aa18.81■□□□□ 0.6
SYNPO-201ENST00000307662 PDZD4Q76G19 769 aaPredicted RBP18.81■□□□□ 0.6
SYNPO-201ENST00000307662 DDX17Q92841 729 aaKnown RBP18.81■□□□□ 0.6
SYNPO-201ENST00000307662 NT5C1BQ96P26 610 aa18.81■□□□□ 0.6
SYNPO-201ENST00000307662 CIAO1O76071 339 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 NUGGCQ68CJ6 796 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.8■□□□□ 0.6
SYNPO-201ENST00000307662 SH2B2O14492 632 aaPredicted RBP18.8■□□□□ 0.6
SYNPO-201ENST00000307662 MMEP08473 750 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 NR5A1Q13285 461 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 TMED1Q13445 227 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 MT-ND3P03897 115 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 ESRRAP11474 423 aaPredicted RBP18.8■□□□□ 0.6
SYNPO-201ENST00000307662 HOXA7P31268 230 aaPredicted RBP18.8■□□□□ 0.6
SYNPO-201ENST00000307662 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.8■□□□□ 0.6
SYNPO-201ENST00000307662 MLH3Q9UHC1 1453 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 CCDC188H7C350 402 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 BCAMP50895 628 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 NAA30Q147X3 362 aaPredicted RBP18.8■□□□□ 0.6
SYNPO-201ENST00000307662 CCDC144BQ3MJ40 725 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 FAM186BQ8IYM0 893 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 PICK1Q9NRD5 415 aa18.8■□□□□ 0.6
SYNPO-201ENST00000307662 TRPA1O75762 1119 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 CUL4BQ13620 913 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 XKR9Q5GH70 373 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 RESP18Q5W5W9 173 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 PPWD1Q96BP3 646 aaKnown RBP18.79■□□□□ 0.6
SYNPO-201ENST00000307662 TEKT3Q9BXF9 490 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 LMTK3Q96Q04 1460 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 EXOC1LA0A1B0GW35 172 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 TADA3O75528 432 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 TNNC2P02585 160 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 IFNAR1P17181 557 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 RFX6Q8HWS3 928 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 MAP7D3Q8IWC1 876 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 RIOK1Q9BRS2 568 aaKnown RBP18.79■□□□□ 0.6
SYNPO-201ENST00000307662 NDST4Q9H3R1 872 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 SEPT10Q9P0V9 454 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 PRDM15P57071 1507 aaPredicted RBP18.79■□□□□ 0.6
SYNPO-201ENST00000307662 ANO9A1A5B4 782 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 DCTN3O75935 186 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 YARSP54577 528 aaKnown RBP18.79■□□□□ 0.6
SYNPO-201ENST00000307662 CLEC17AQ6ZS10 378 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 SLAIN2Q9P270 581 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 RPS8P62241 208 aaKnown RBP18.79■□□□□ 0.6
SYNPO-201ENST00000307662 ODR4Q5SWX8 454 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 MORC4Q8TE76 937 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 EFHD1Q9BUP0 239 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 BAG5Q9UL15 447 aa18.79■□□□□ 0.6
SYNPO-201ENST00000307662 USP27XA6NNY8 438 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 APOEP02649 317 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 GAP43P17677 238 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 SAT1P21673 171 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 CHURC1Q8WUH1 139 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 MRPL46Q9H2W6 279 aaKnown RBP18.78■□□□□ 0.6
SYNPO-201ENST00000307662 GINS2Q9Y248 185 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 PCDHB6Q9Y5E3 794 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 GFPT2O94808 682 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 TCP10Q12799 353 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 CSRNP1Q96S65 589 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 PLEKHG1Q9ULL1 1385 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 EFCAB6Q5THR3 1501 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 ZCCHC17Q9NP64 241 aaKnown RBP18.78■□□□□ 0.6
SYNPO-201ENST00000307662 ABHD10Q9NUJ1 306 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 ECE1P42892 770 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 LRRC47Q8N1G4 583 aaKnown RBP18.78■□□□□ 0.6
SYNPO-201ENST00000307662 FGFR1OP2Q9NVK5 253 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 WDR46O15213 610 aaKnown RBP18.78■□□□□ 0.6
SYNPO-201ENST00000307662 POLR2MP0CAP2 368 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 ADORA1P30542 326 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 PIK3CAP42336 1068 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 GYG1P46976 350 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 DMP1Q13316 513 aaPredicted RBP18.78■□□□□ 0.6
SYNPO-201ENST00000307662 RASGRP4Q8TDF6 673 aa18.78■□□□□ 0.6
SYNPO-201ENST00000307662 CYP4A11Q02928 519 aa18.77■□□□□ 0.6
SYNPO-201ENST00000307662 PACSIN2Q9UNF0 486 aaPredicted RBP18.77■□□□□ 0.6
SYNPO-201ENST00000307662 SRGAP2O75044 1071 aa18.77■□□□□ 0.6
SYNPO-201ENST00000307662 PSMD2Q13200 908 aa18.77■□□□□ 0.6
SYNPO-201ENST00000307662 DPP8Q6V1X1 898 aaPredicted RBP18.77■□□□□ 0.6
SYNPO-201ENST00000307662 PGBD1Q96JS3 809 aa18.77■□□□□ 0.6
SYNPO-201ENST00000307662 GCNT4Q9P109 453 aa18.77■□□□□ 0.6
SYNPO-201ENST00000307662 UGGT1Q9NYU2 1555 aa18.77■□□□□ 0.6
SYNPO-201ENST00000307662 ATP5HO75947 161 aa18.77■□□□□ 0.6
SYNPO-201ENST00000307662 NBPF10Q6P3W6 841 aaKnown RBP18.77■□□□□ 0.6
SYNPO-201ENST00000307662 INTUQ9ULD6 942 aa18.77■□□□□ 0.6
SYNPO-201ENST00000307662 TMEM232C9JQI7 657 aa18.77■□□□□ 0.59
SYNPO-201ENST00000307662 KRT80Q6KB66 452 aa18.77■□□□□ 0.59
SYNPO-201ENST00000307662 FBXO11Q86XK2 927 aa18.77■□□□□ 0.59
SYNPO-201ENST00000307662 PITPNM3Q9BZ71 974 aa18.77■□□□□ 0.59
SYNPO-201ENST00000307662 STX1BP61266 288 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 PABPC4Q13310 644 aaKnown RBP eCLIP18.76■□□□□ 0.59
SYNPO-201ENST00000307662 HDAC11Q96DB2 347 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 GMNCA6NCL1 334 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 MRPS25P82663 173 aaKnown RBP18.76■□□□□ 0.59
SYNPO-201ENST00000307662 PIP4K2CQ8TBX8 421 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 SLC24A3Q9HC58 644 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 LRRN2O75325 713 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 CA4P22748 312 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms