RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 MICAL1Q8TDZ2 1067 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 NLRP7Q8WX94 980 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 TRAPPC9Q96Q05 1148 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 ZKSCAN3Q9BRR0 538 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 AGTPBP1Q9UPW5 1226 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 CD2APQ9Y5K6 639 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 ACTL7BQ9Y614 415 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 CPS1P31327 1500 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 VGLL3A8MV65 326 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 KCNJ18B7U540 433 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 PPP1R37O75864 691 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 CCNE1P24864 410 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 ELF1P32519 619 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 STAT1P42224 750 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 KCNJ12Q14500 433 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 SPOUT1Q5T280 376 aaKnown RBP5.67□□□□□ -1.5
SCN1A-201ENST00000303395 ZNF658Q5TYW1 1059 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-201ENST00000303395 TRIM72Q6ZMU5 477 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 KRT27Q7Z3Y8 459 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 HEATR3Q7Z4Q2 680 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 SGMS1Q86VZ5 419 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 CHMP6Q96FZ7 201 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 KDM6AO15550 1401 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-201ENST00000303395 USP6P35125 1406 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 F8W8V4 182 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 TAP1Q03518 808 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 DDR1Q08345 913 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 PDCLQ13371 301 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 SURF1Q15526 300 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 FRA10AC1Q70Z53 315 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 KIAA0825Q8IV33 1275 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 MREGQ8N565 214 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 IP6K1Q92551 441 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 CMTM5Q96DZ9 223 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 PLEKHF1Q96S99 279 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 TRIM8Q9BZR9 551 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 SRPRBQ9Y5M8 271 aaKnown RBP5.67□□□□□ -1.5
SCN1A-201ENST00000303395 ERBB3P21860 1342 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 IGSF1Q8N6C5 1336 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 KRT87PA6NCN2 255 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 KCNQ3O43525 872 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 CPA3P15088 417 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 MYL6P60660 151 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 KLHL38Q2WGJ6 581 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 KDM4CQ9H3R0 1056 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 PFKFB1P16118 471 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 USPL1Q5W0Q7 1092 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 JADE3Q92613 823 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 CDKL2Q92772 493 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 CAVIN3Q969G5 261 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 SPDL1Q96EA4 605 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 TEX12Q9BXU0 123 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 MRPL46Q9H2W6 279 aaKnown RBP5.67□□□□□ -1.5
SCN1A-201ENST00000303395 C1orf115Q9H7X2 142 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 PARVBQ9HBI1 364 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 CABP5Q9NP86 173 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 SLC13A4Q9UKG4 626 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 ARHGAP26Q9UNA1 814 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 WFS1O76024 890 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 SLC12A2P55011 1212 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 KRT40Q6A162 431 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 NECAB1Q8N987 351 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 INTS9Q9NV88 658 aaKnown RBP5.67□□□□□ -1.5
SCN1A-201ENST00000303395 BLOC1S6Q9UL45 172 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 ABCC3O15438 1527 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 UBXN8O00124 270 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 ZNF263O14978 683 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 ACADVLP49748 655 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 HDAC4P56524 1084 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 SKOR1P84550 965 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 PUM3Q15397 648 aaKnown RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 TRADDQ15628 312 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 GSTA3Q16772 222 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 TNNI3KQ59H18 835 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 FSCBQ5H9T9 825 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 CD302Q8IX05 232 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 MKL2Q9ULH7 1088 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 FPGT-TNNI3KV9GXZ4 949 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 GMNCA6NCL1 334 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 LGALS16A8MUM7 142 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 XRCC5P13010 732 aaKnown RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 P4HA1P13674 534 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 C4BPBP20851 252 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 TOGARAM2Q6ZUX3 1019 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 CADPS2Q86UW7 1296 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 PDZD8Q8NEN9 1154 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 ZNF653Q96CK0 615 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 JPH2Q9BR39 696 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 PHF8Q9UPP1 1060 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 BCORL1Q5H9F3 1711 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 SERPING1P05155 500 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 TSHRP16473 764 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 KLHL30Q0D2K2 578 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 FKBP9P1Q75LS8 142 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 SAMD3Q8N6K7 520 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 ZNF280CQ8ND82 737 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 NR1H4Q96RI1 486 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 CLEC11AQ9Y240 323 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms