RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SIGLEC1Q9BZZ2 1709 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 NT5C3AQ9H0P0 336 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 LCMT1Q9UIC8 334 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 SNX12Q9UMY4 172 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 CNGA1P29973 690 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 HP1BP3Q5SSJ5 553 aaPredicted RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 HHATQ5VTY9 493 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 DGKHQ86XP1 1220 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 SLF2Q8IX21 1173 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 ZNF654Q8IZM8 581 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 ASZ1Q8WWH4 475 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 NELFBQ8WX92 580 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 C6orf50Q9HD87 102 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 GAS8O95995 478 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 SRGNP10124 158 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 RPL13P26373 211 aaKnown RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 GSCP56915 257 aaPredicted RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 PSMC1P62191 440 aaKnown RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 GSTO1P78417 241 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 KRT31Q15323 416 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 CCDC14Q49A88 953 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 CCDC152Q4G0S7 254 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 MB21D1Q8N884 522 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 CENPTQ96BT3 561 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 FOXP3Q9BZS1 431 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 EPN3Q9H201 632 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 NCOA5Q9HCD5 579 aaKnown RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 BIN2Q9UBW5 565 aaPredicted RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 SCOCQ9UIL1 159 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 DCCP43146 1447 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 BTNL10A8MVZ5 291 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 RHOBTB1O94844 696 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 RHOBTB3O94955 611 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 PDE6AP16499 860 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 VSNL1P62760 191 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 DPYDQ12882 1025 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 RIPK1Q13546 671 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 TNIP1Q15025 636 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 ANKRD20A3Q5VUR7 823 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 CSGALNACT2Q8N6G5 542 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 ENAHQ8N8S7 591 aaPredicted RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 PAWRQ96IZ0 340 aaKnown RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 ISCA1Q9BUE6 129 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 CRNKL1Q9BZJ0 848 aaKnown RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 PLAGL2Q9UPG8 496 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 E7ENQ6 273 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 E9PMD0 336 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 DNAJC6O75061 913 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 IDH1O75874 414 aaKnown RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 ESRRGP62508 458 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 BTNL9Q6UXG8 535 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 ADSSL1Q8N142 457 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 CABLES1Q8TDN4 633 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 AENQ8WTP8 325 aaKnown RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 PAGE5Q96GU1 130 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 ATP6V1G3Q96LB4 118 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 OSBPL9Q96SU4 736 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 CDCA7Q9BWT1 371 aaPredicted RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 ARPP21Q9UBL0 812 aaPredicted RBP6.97□□□□□ -1.29
VPS35-201ENST00000299138 ANGPTL3Q9Y5C1 460 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 NBPF26B4DH59 902 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 SEC31AO94979 1220 aaKnown RBP6.96□□□□□ -1.29
VPS35-201ENST00000299138 GCFC2P16383 781 aaKnown RBP6.96□□□□□ -1.29
VPS35-201ENST00000299138 CARSP49589 748 aaKnown RBP6.96□□□□□ -1.29
VPS35-201ENST00000299138 SYCP3Q8IZU3 236 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 GUF1Q8N442 669 aaKnown RBP6.96□□□□□ -1.29
VPS35-201ENST00000299138 NBPF15Q8N660 670 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 BBOF1Q8ND07 529 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 CCDC138Q96M89 665 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 CCDC68Q9H2F9 335 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 LIN7AO14910 233 aaPredicted RBP6.96□□□□□ -1.29
VPS35-201ENST00000299138 EEF1B2P24534 225 aaKnown RBP6.96□□□□□ -1.29
VPS35-201ENST00000299138 NPEPPSP55786 919 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 ZBTB38Q8NAP3 1195 aaPredicted RBP6.96□□□□□ -1.29
VPS35-201ENST00000299138 GRAMD1AQ96CP6 724 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 FAM212AQ96EL1 285 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 COQ7Q99807 217 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 HAUS8Q9BT25 410 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 HPS5Q9UPZ3 1129 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 KDM3AQ9Y4C1 1321 aa6.96□□□□□ -1.29
VPS35-201ENST00000299138 ORC4O43929 436 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 RPN1P04843 607 aaKnown RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 PLCG2P16885 1265 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 ADKP55263 362 aaKnown RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 MDM2Q00987 491 aaPredicted RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 NR1H3Q13133 447 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 MFSD4BQ5TF39 518 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 PPP1R18Q6NYC8 613 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 ANKRD35Q8N283 1001 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 ZNF513Q8N8E2 541 aaPredicted RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 ANKRD42Q8N9B4 389 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 SAAL1Q96ER3 474 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 KAZALD1Q96I82 304 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 ZNF496Q96IT1 587 aaPredicted RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 LGR6Q9HBX8 967 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 PDE8AO60658 829 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 CSF1RP07333 972 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 MYL6BP14649 208 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 NR1D1P20393 614 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 TAF11Q15544 211 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms