RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 H2AFZP0C0S5 128 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 H2AFVQ71UI9 128 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 DZIP3Q86Y13 1208 aaKnown RBP12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 TTC17Q96AE7 1141 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 EIF3BP55884 814 aaKnown RBP12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 SLC8A3P57103 927 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 ATP6V1G3Q96LB4 118 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 COG4Q9H9E3 785 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 C10orf76Q5T2E6 689 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 NSMCE1Q8WV22 266 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 SEPT3Q9UH03 358 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 DAPK1P53355 1430 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 RBM6P78332 1123 aaKnown RBP12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 HDDC2Q7Z4H3 204 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 TTC6Q86TZ1 520 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 TRIM50Q86XT4 487 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 SRRM1Q8IYB3 904 aaKnown RBP12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 RFWD2Q8NHY2 731 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 CLMNQ96JQ2 1002 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 INPP5FQ9Y2H2 1132 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 TRAPPC10P48553 1259 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 KRT31Q15323 416 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 CD2BP2O95400 341 aaKnown RBP12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 ATP2B4P23634 1241 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 GLE1Q53GS7 698 aaKnown RBP12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 SKA2Q8WVK7 121 aaPredicted RBP12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 SESN1Q9Y6P5 492 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 PCDHA13Q9Y5I0 950 aa12.68□□□□□ -0.38
SHROOM3-201ENST00000296043 GNA14O95837 355 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 OCRLQ01968 901 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 PANX2Q96RD6 677 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 RAB44Q7Z6P3 723 aaPredicted RBP12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 HDAC6Q9UBN7 1215 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 MAGED2Q9UNF1 606 aaPredicted RBP12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 UQCRFS1P1P0C7P4 283 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 EIF4A3P38919 411 aaKnown RBP12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 GSTO1P78417 241 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 CLIC4Q9Y696 253 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 DDHD2O94830 711 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 PGM1P36871 562 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 GPCPD1Q9NPB8 672 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 KIF19Q2TAC6 998 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 MCF2L2Q86YR7 1114 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 PALD1Q9ULE6 856 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 RSPH10B2B2RC85 870 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 LSM1O15116 133 aaKnown RBP12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 RSPH10BP0C881 870 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 CYP27A1Q02318 531 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 TSTA3Q13630 321 aaPredicted RBP12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 RNF207Q6ZRF8 634 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 TRIM11Q96F44 468 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 ESYT3A0FGR9 886 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 S100A5P33763 92 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 RAB14P61106 215 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 PCDHB13Q9Y5F0 798 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 GRM8O00222 908 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 LRRC14Q15048 493 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 ARHGEF35A5YM69 484 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 EIF3HO15372 352 aaKnown RBP eCLIP12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 CCND1P24385 295 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 ATP6V1E1P36543 226 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 CABP7Q86V35 215 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 CDKL2Q92772 493 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 CCT8L2Q96SF2 557 aa12.67□□□□□ -0.38
SHROOM3-201ENST00000296043 TTI1O43156 1089 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 PJA2O43164 708 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 DYNLT1P63172 113 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 PRAMEP78395 509 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 ARL8AQ96BM9 186 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 GOLGA8IPA6NC78 632 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 TSPAN9O75954 239 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 MRPS35P82673 323 aaKnown RBP12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 PRPSAP1Q14558 356 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 IQCA1LA6NCM1 817 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 TRIM37O94972 964 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 AFPP02771 609 aaKnown RBP12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 RNF217Q8TC41 542 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 CAPN9O14815 690 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 PDXDC1Q6P996 788 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 JAG2Q9Y219 1238 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 FAM200BP0CF97 657 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 ALDH18A1P54886 795 aaKnown RBP12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 ITKQ08881 620 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 CDR2LQ86X02 465 aaPredicted RBP12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 SH2D3CQ8N5H7 860 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 ZNF473Q8WTR7 871 aaKnown RBP12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 MTA3Q9BTC8 594 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 CMA1P23946 247 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 KRT17Q04695 432 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 RFX6Q8HWS3 928 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 EXOC8Q8IYI6 725 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 VPS54Q9P1Q0 977 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 AOX1Q06278 1338 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 RGS12O14924 1447 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 BBS9Q3SYG4 887 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 HORMAD1Q86X24 394 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 DEPDC1BQ8WUY9 529 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 SGSM2O43147 1006 aa12.66□□□□□ -0.38
SHROOM3-201ENST00000296043 ANGPTL8Q6UXH0 198 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms