RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 LSM14BQ9BX40 385 aaKnown RBP11.29□□□□□ -0.6
LMX1A-201ENST00000294816 PACSIN1Q9BY11 444 aa11.29□□□□□ -0.6
LMX1A-201ENST00000294816 DDX47Q9H0S4 455 aaKnown RBP11.29□□□□□ -0.6
LMX1A-201ENST00000294816 GOPCQ9HD26 462 aa11.29□□□□□ -0.6
LMX1A-201ENST00000294816 CNOT8Q9UFF9 292 aaKnown RBP11.29□□□□□ -0.6
LMX1A-201ENST00000294816 ADAMTS1Q9UHI8 967 aa11.29□□□□□ -0.6
LMX1A-201ENST00000294816 ASAP1Q9ULH1 1129 aa11.29□□□□□ -0.6
LMX1A-201ENST00000294816 PCDHA4Q9UN74 947 aa11.29□□□□□ -0.6
LMX1A-201ENST00000294816 LRP6O75581 1613 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 DCDC2CA8MYV0 355 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 CCNT1O60563 726 aaKnown RBP11.28□□□□□ -0.6
LMX1A-201ENST00000294816 STARD3NLO95772 234 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 FGFR2P21802 821 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 ZNF844Q08AG5 666 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 KIAA0895Q8NCT3 520 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 THOC1Q96FV9 657 aaKnown RBP11.28□□□□□ -0.6
LMX1A-201ENST00000294816 CDK5RAP3Q96JB5 506 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 PAGR1Q9BTK6 254 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 RNF14Q9UBS8 474 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 PCDH11XQ9BZA7 1347 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 PCDH11YQ9BZA8 1340 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 TRAPPC3O43617 180 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 SLC8A1P32418 973 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 KIF5BP33176 963 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 HSPA9P38646 679 aaKnown RBP11.28□□□□□ -0.6
LMX1A-201ENST00000294816 AMPD3Q01432 767 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 MYO1EQ12965 1108 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 ACCSLQ4AC99 568 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 NAIF1Q69YI7 327 aaPredicted RBP11.28□□□□□ -0.6
LMX1A-201ENST00000294816 ZSCAN29Q8IWY8 852 aaPredicted RBP11.28□□□□□ -0.6
LMX1A-201ENST00000294816 MREGQ8N565 214 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 TRIM6Q9C030 488 aaPredicted RBP11.28□□□□□ -0.6
LMX1A-201ENST00000294816 PLCB1Q9NQ66 1216 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 ERVV-2B6SEH9 535 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 CYP2D6P10635 497 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 GYG1P46976 350 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 WLSQ5T9L3 541 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 STAG2Q8N3U4 1231 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 RNF10Q8N5U6 811 aaKnown RBP11.28□□□□□ -0.6
LMX1A-201ENST00000294816 CALML4Q96GE6 196 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 RSRC1Q96IZ7 334 aaKnown RBP11.28□□□□□ -0.6
LMX1A-201ENST00000294816 DISP2A7MBM2 1401 aa11.28□□□□□ -0.6
LMX1A-201ENST00000294816 KAT6BQ8WYB5 2073 aa11.27□□□□□ -0.6
LMX1A-201ENST00000294816 CTNND1O60716 968 aaKnown RBP11.27□□□□□ -0.6
LMX1A-201ENST00000294816 HNRNPH3P31942 346 aaKnown RBP11.27□□□□□ -0.6
LMX1A-201ENST00000294816 FLT3P36888 993 aa11.27□□□□□ -0.6
LMX1A-201ENST00000294816 EPS15P42566 896 aa11.27□□□□□ -0.6
LMX1A-201ENST00000294816 FAM133BQ5BKY9 247 aaKnown RBP11.27□□□□□ -0.6
LMX1A-201ENST00000294816 TBC1D1Q86TI0 1168 aaPredicted RBP11.27□□□□□ -0.6
LMX1A-201ENST00000294816 USP38Q8NB14 1042 aa11.27□□□□□ -0.6
LMX1A-201ENST00000294816 BAP1Q92560 729 aa11.27□□□□□ -0.6
LMX1A-201ENST00000294816 CCSER1Q9C0I3 900 aa11.27□□□□□ -0.6
LMX1A-201ENST00000294816 LMTK3Q96Q04 1460 aa11.27□□□□□ -0.6
LMX1A-201ENST00000294816 ADAMTS7Q9UKP4 1686 aa11.27□□□□□ -0.6
LMX1A-201ENST00000294816 CHD4Q14839 1912 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 TRAF5O00463 557 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 PJA2O43164 708 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 DAPK3O43293 454 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 FGFR1OPO95684 399 aaKnown RBP11.27□□□□□ -0.61
LMX1A-201ENST00000294816 MYL1P05976 194 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 PEX19P40855 299 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 TXKP42681 527 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 KLHL30Q0D2K2 578 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 UAP1Q16222 522 aaPredicted RBP11.27□□□□□ -0.61
LMX1A-201ENST00000294816 FAM133AQ8N9E0 248 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 CCDC113Q9H0I3 377 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 NEUROG2Q9H2A3 272 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 CPVLQ9H3G5 476 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 NOD2Q9HC29 1040 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 TBC1D7Q9P0N9 293 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 MYH2Q9UKX2 1941 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 IGHMBP2P38935 993 aaKnown RBP11.27□□□□□ -0.61
LMX1A-201ENST00000294816 SATB1Q01826 763 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 DHX9Q08211 1270 aaKnown RBP11.27□□□□□ -0.61
LMX1A-201ENST00000294816 SV2BQ7L1I2 683 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 FMNL3Q8IVF7 1028 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 CCDC63Q8NA47 563 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 IQCDQ96DY2 449 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 STAMBPL1Q96FJ0 436 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 INPP4AQ96PE3 977 aaPredicted RBP11.27□□□□□ -0.61
LMX1A-201ENST00000294816 TSG101Q99816 390 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 ISCUQ9H1K1 167 aa11.27□□□□□ -0.61
LMX1A-201ENST00000294816 TNS3Q68CZ2 1445 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 KRIT1O00522 736 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 OR52Z1P0C646 297 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 CDC25CP30307 473 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 FAM83BQ5T0W9 1011 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 UHMK1Q8TAS1 419 aaKnown RBP11.26□□□□□ -0.61
LMX1A-201ENST00000294816 AMACRQ9UHK6 382 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 SLC12A6Q9UHW9 1150 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 PCDHA6Q9UN73 950 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 ATP8A1Q9Y2Q0 1164 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 PCDHA8Q9Y5H6 950 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 A0A087X0T9 212 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 GRID2IPA4D2P6 1211 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 FAM228BP0C875 321 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 GCKP35557 465 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 BIRC3Q13489 604 aa11.26□□□□□ -0.61
LMX1A-201ENST00000294816 PRPF4BQ13523 1007 aaKnown RBP11.26□□□□□ -0.61
LMX1A-201ENST00000294816 CRYMQ14894 314 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms