RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CCDC13Q8IYE1 715 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 HINFPQ9BQA5 517 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 CAPS2Q9BXY5 557 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 SEPT9Q9UHD8 586 aaPredicted RBP20.8■□□□□ 0.92
UPF1-201ENST00000262803 ROBO2Q9HCK4 1378 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 PRKAB2O43741 272 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 EHHADHQ08426 723 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 BCAS4Q8TDM0 211 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 SLC8A2Q9UPR5 921 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 KIAA1024Q9UPX6 916 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 HEXIM1O94992 359 aaKnown RBP20.8■□□□□ 0.92
UPF1-201ENST00000262803 BMP3P12645 472 aa20.8■□□□□ 0.92
UPF1-201ENST00000262803 NPR1P16066 1061 aa20.79■□□□□ 0.92
UPF1-201ENST00000262803 DYNLL1P63167 89 aaKnown RBP20.79■□□□□ 0.92
UPF1-201ENST00000262803 RASSF7Q02833 373 aa20.79■□□□□ 0.92
UPF1-201ENST00000262803 ADAT2Q7Z6V5 191 aaKnown RBP20.79■□□□□ 0.92
UPF1-201ENST00000262803 FOXP4Q8IVH2 680 aaPredicted RBP20.79■□□□□ 0.92
UPF1-201ENST00000262803 RNF10Q8N5U6 811 aaKnown RBP20.79■□□□□ 0.92
UPF1-201ENST00000262803 CCDC38Q502W7 563 aa20.79■□□□□ 0.92
UPF1-201ENST00000262803 CALR3Q96L12 384 aaKnown RBP20.79■□□□□ 0.92
UPF1-201ENST00000262803 SEC31BQ9NQW1 1179 aa20.79■□□□□ 0.92
UPF1-201ENST00000262803 VPS41P49754 854 aa20.79■□□□□ 0.92
UPF1-201ENST00000262803 MYO1EQ12965 1108 aa20.79■□□□□ 0.92
UPF1-201ENST00000262803 NME8Q8N427 588 aa20.79■□□□□ 0.92
UPF1-201ENST00000262803 MRPL47Q9HD33 250 aaKnown RBP20.79■□□□□ 0.92
UPF1-201ENST00000262803 MYO1FO00160 1098 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 PSAPP07602 524 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 GUCY2DQ02846 1103 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 RBBP5Q15291 538 aaKnown RBP20.78■□□□□ 0.92
UPF1-201ENST00000262803 LCORLQ8N3X6 602 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 P2RX5Q93086 422 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 RNF14Q9UBS8 474 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 BAIAP2L1Q9UHR4 511 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 DLATP10515 647 aaKnown RBP20.78■□□□□ 0.92
UPF1-201ENST00000262803 BSPRYQ5W0U4 402 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 ENOX1Q8TC92 643 aaKnown RBP20.78■□□□□ 0.92
UPF1-201ENST00000262803 PI4KBQ9UBF8 816 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 PPP2R5CQ13362 524 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.78■□□□□ 0.92
UPF1-201ENST00000262803 PPP1R12CQ9BZL4 782 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 ZSWIM5Q9P217 1185 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 MID2Q9UJV3 735 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 KMT5AQ9NQR1 393 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 SERPINB13Q9UIV8 391 aa20.78■□□□□ 0.92
UPF1-201ENST00000262803 ABL1P00519 1130 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 AFPP02771 609 aaKnown RBP20.77■□□□□ 0.92
UPF1-201ENST00000262803 SDCCAG3Q96C92 435 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 AKT3Q9Y243 479 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 GSTA1P08263 222 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 GSTA2P09210 222 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 GIMAP8Q8ND71 665 aaPredicted RBP20.77■□□□□ 0.92
UPF1-201ENST00000262803 JRKLQ9Y4A0 524 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 STAT2P52630 851 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 CLNS1AP54105 237 aaKnown RBP20.77■□□□□ 0.92
UPF1-201ENST00000262803 SRRM1Q8IYB3 904 aaKnown RBP20.77■□□□□ 0.92
UPF1-201ENST00000262803 CCDC127Q96BQ5 260 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 SCYL1Q96KG9 808 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 GCNAQ96QF7 691 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 COA1Q9GZY4 146 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 RIPOR2Q9Y4F9 1068 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 PCDHB4Q9Y5E5 795 aa20.77■□□□□ 0.92
UPF1-201ENST00000262803 CPSF1Q10570 1443 aaKnown RBP20.77■□□□□ 0.92
UPF1-201ENST00000262803 SEC31AO94979 1220 aaKnown RBP20.77■□□□□ 0.91
UPF1-201ENST00000262803 ZNF658Q5TYW1 1059 aaPredicted RBP20.77■□□□□ 0.91
UPF1-201ENST00000262803 SYDE2Q5VT97 1194 aa20.77■□□□□ 0.91
UPF1-201ENST00000262803 PPP4R3CPQ6ZMV5 832 aa20.77■□□□□ 0.91
UPF1-201ENST00000262803 SEPT14Q6ZU15 432 aa20.77■□□□□ 0.91
UPF1-201ENST00000262803 ARMCX2Q7L311 632 aa20.77■□□□□ 0.91
UPF1-201ENST00000262803 SAMSN1Q9NSI8 373 aaKnown RBP20.77■□□□□ 0.91
UPF1-201ENST00000262803 ANKFY1Q9P2R3 1169 aa20.77■□□□□ 0.91
UPF1-201ENST00000262803 ZC3H15Q8WU90 426 aaKnown RBP20.76■□□□□ 0.91
UPF1-201ENST00000262803 EVI5O60447 810 aa20.76■□□□□ 0.91
UPF1-201ENST00000262803 KRT27Q7Z3Y8 459 aa20.76■□□□□ 0.91
UPF1-201ENST00000262803 AIFM3Q96NN9 605 aa20.76■□□□□ 0.91
UPF1-201ENST00000262803 PLEKHG2Q9H7P9 1386 aa20.76■□□□□ 0.91
UPF1-201ENST00000262803 ERBB3P21860 1342 aa20.76■□□□□ 0.91
UPF1-201ENST00000262803 NCAPD2Q15021 1401 aa20.76■□□□□ 0.91
UPF1-201ENST00000262803 SLFN12LQ6IEE8 588 aa20.76■□□□□ 0.91
UPF1-201ENST00000262803 FBXO40Q9UH90 709 aa20.76■□□□□ 0.91
UPF1-201ENST00000262803 CAPN7Q9Y6W3 813 aa20.76■□□□□ 0.91
UPF1-201ENST00000262803 ABCA8O94911 1581 aa20.76■□□□□ 0.91
UPF1-201ENST00000262803 PPARGP37231 505 aaPredicted RBP20.76■□□□□ 0.91
UPF1-201ENST00000262803 NLRP10Q86W26 655 aa20.76■□□□□ 0.91
UPF1-201ENST00000262803 ADGRL3Q9HAR2 1447 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 H7C0C1 242 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 ATP8B1O43520 1251 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 ATP5OP48047 213 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 RSRC2Q7L4I2 434 aaKnown RBP20.75■□□□□ 0.91
UPF1-201ENST00000262803 VSTM4Q8IW00 320 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 TCP11Q8WWU5 503 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 CPSF3Q9UKF6 684 aaKnown RBP20.75■□□□□ 0.91
UPF1-201ENST00000262803 NR2F2P24468 414 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 LIFRP42702 1097 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 DBN1Q16643 649 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 NAA35Q5VZE5 725 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 CLEC4GQ6UXB4 293 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 UHMK1Q8TAS1 419 aaKnown RBP20.75■□□□□ 0.91
UPF1-201ENST00000262803 FAM167AQ96KS9 214 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 ARL4AP40617 200 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 DISC1Q9NRI5 854 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms