RNA–Protein interactions for RNA: ENST00000262570.9

CHCHD3-201, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHCHD3, Length 1,598 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-201ENST00000262570 ADCY6O43306 1168 aa18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 CCNT1O60563 726 aaKnown RBP18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 GCFC2P16383 781 aaKnown RBP18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 TOB1P50616 345 aaPredicted RBP18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 TNFAIP2Q03169 654 aa18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 Q4G0T1 1027 aa18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 DUSP28Q4G0W2 176 aa18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 PRR16Q569H4 304 aa18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 TMEM63BQ5T3F8 832 aa18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 PLA2G4DQ86XP0 818 aa18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 CDHR1Q96JP9 859 aa18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 NAP1L4Q99733 375 aaKnown RBP18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 ZSCAN16Q9H4T2 348 aaPredicted RBP18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 PAK6Q9NQU5 681 aaPredicted RBP18.89■□□□□ 0.61
CHCHD3-201ENST00000262570 MYCP01106 439 aaPredicted RBP18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 ZSCAN22P10073 491 aaPredicted RBP18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 ARP10275 920 aa18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 TXNP10599 105 aaKnown RBP18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 CCL5P13501 91 aa18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 SMPD1P17405 629 aa18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 SETQ01105 290 aaPredicted RBP18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 SP2Q02086 613 aa18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 RILPL1Q5EBL4 403 aa18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 IPO9Q96P70 1041 aaKnown RBP18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 RNF208Q9H0X6 261 aa18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 NOL7Q9UMY1 257 aaKnown RBP18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 GNEQ9Y223 722 aaKnown RBP18.88■□□□□ 0.61
CHCHD3-201ENST00000262570 MSCO60682 206 aa18.87■□□□□ 0.61
CHCHD3-201ENST00000262570 ATP9AO75110 1047 aa18.87■□□□□ 0.61
CHCHD3-201ENST00000262570 BRD1O95696 1058 aa18.87■□□□□ 0.61
CHCHD3-201ENST00000262570 ATP2B1P20020 1258 aa18.87■□□□□ 0.61
CHCHD3-201ENST00000262570 LY6KQ17RY6 165 aa18.87■□□□□ 0.61
CHCHD3-201ENST00000262570 MYSM1Q5VVJ2 828 aa18.87■□□□□ 0.61
CHCHD3-201ENST00000262570 SENP7Q9BQF6 1050 aa18.87■□□□□ 0.61
CHCHD3-201ENST00000262570 DDX20Q9UHI6 824 aaKnown RBP18.87■□□□□ 0.61
CHCHD3-201ENST00000262570 DDX25Q9UHL0 483 aaKnown RBP18.87■□□□□ 0.61
CHCHD3-201ENST00000262570 ZDHHC9Q9Y397 364 aa18.87■□□□□ 0.61
CHCHD3-201ENST00000262570 KIAA1217Q5T5P2 1943 aa18.86■□□□□ 0.61
CHCHD3-201ENST00000262570 NKRFO15226 690 aaKnown RBP eCLIP18.86■□□□□ 0.61
CHCHD3-201ENST00000262570 SLC37A4O43826 429 aa18.86■□□□□ 0.61
CHCHD3-201ENST00000262570 DUSP11O75319 330 aaKnown RBP18.86■□□□□ 0.61
CHCHD3-201ENST00000262570 LHX8Q68G74 356 aa18.86■□□□□ 0.61
CHCHD3-201ENST00000262570 MSH4O15457 936 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 F13A1P00488 732 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 RARBP10826 455 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 KCNA2P16389 499 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 UBA1P22314 1058 aaKnown RBP18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 TTC38Q5R3I4 469 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 GJC2Q5T442 439 aaPredicted RBP18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 ANO1Q5XXA6 986 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 COPS5Q92905 334 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 LENG1Q96BZ8 264 aaPredicted RBP18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 AGO4Q9HCK5 861 aaKnown RBP18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 Q9Y3F1 56 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 PTGS1P23219 599 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 MCM7P33993 719 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 ORC2Q13416 577 aaPredicted RBP18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 NEDD9Q14511 834 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 NBR1Q14596 966 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 FOXD4L5Q5VV16 416 aaPredicted RBP18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 FAM173BQ6P4H8 233 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 FOXD4L4Q8WXT5 416 aaPredicted RBP18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 BCAS3Q9H6U6 928 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 PCDHB6Q9Y5E3 794 aa18.85■□□□□ 0.61
CHCHD3-201ENST00000262570 POTEFA5A3E0 1075 aa18.84■□□□□ 0.61
CHCHD3-201ENST00000262570 IPO5O00410 1097 aaKnown RBP18.84■□□□□ 0.61
CHCHD3-201ENST00000262570 ITGB3BPQ13352 177 aaPredicted RBP18.84■□□□□ 0.61
CHCHD3-201ENST00000262570 ZNF174Q15697 407 aa18.84■□□□□ 0.61
CHCHD3-201ENST00000262570 POTEDQ86YR6 584 aa18.84■□□□□ 0.61
CHCHD3-201ENST00000262570 ETNPPLQ8TBG4 499 aa18.84■□□□□ 0.61
CHCHD3-201ENST00000262570 DEFB118Q96PH6 123 aa18.84■□□□□ 0.61
CHCHD3-201ENST00000262570 ZNF577Q9BSK1 485 aa18.84■□□□□ 0.61
CHCHD3-201ENST00000262570 KCNMB3Q9NPA1 279 aa18.84■□□□□ 0.61
CHCHD3-201ENST00000262570 TBX3O15119 743 aa18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 DHX15O43143 795 aaKnown RBP18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 DYNC1LI2O43237 492 aaPredicted RBP18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 GGPS1O95749 300 aa18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 GH1P01241 217 aa18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 GJB1P08034 283 aa18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 NUCB2P80303 420 aa18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 ARHGAP1Q07960 439 aa18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 CELF3Q5SZQ8 465 aaKnown RBP18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 TLK2Q86UE8 772 aa18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 GIMAP8Q8ND71 665 aaPredicted RBP18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 EMID1Q96A84 441 aaPredicted RBP18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 PKD2L1Q9P0L9 805 aa18.83■□□□□ 0.6
CHCHD3-201ENST00000262570 NEMFO60524 1076 aa18.82■□□□□ 0.6
CHCHD3-201ENST00000262570 FARP2O94887 1054 aaPredicted RBP18.82■□□□□ 0.6
CHCHD3-201ENST00000262570 GJA9P57773 515 aa18.82■□□□□ 0.6
CHCHD3-201ENST00000262570 LAMC2Q13753 1193 aa18.82■□□□□ 0.6
CHCHD3-201ENST00000262570 METTL7BQ6UX53 244 aa18.82■□□□□ 0.6
CHCHD3-201ENST00000262570 CYFIP1Q7L576 1253 aa18.82■□□□□ 0.6
CHCHD3-201ENST00000262570 DHX37Q8IY37 1157 aaKnown RBP18.82■□□□□ 0.6
CHCHD3-201ENST00000262570 HAS1Q92839 578 aa18.82■□□□□ 0.6
CHCHD3-201ENST00000262570 SLC5A5Q92911 643 aa18.82■□□□□ 0.6
CHCHD3-201ENST00000262570 FAM20AQ96MK3 541 aa18.82■□□□□ 0.6
CHCHD3-201ENST00000262570 UIMC1Q96RL1 719 aa18.82■□□□□ 0.6
CHCHD3-201ENST00000262570 UPF3AQ9H1J1 476 aaKnown RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms