RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 OTUD6BQ8N6M0 293 aa14.36□□□□□ -0.11
SNX1-201ENST00000261889 CASKIN2Q8WXE0 1202 aa14.36□□□□□ -0.11
SNX1-201ENST00000261889 F8W031 263 aaPredicted RBP14.36□□□□□ -0.11
SNX1-201ENST00000261889 KCNK3O14649 394 aa14.36□□□□□ -0.11
SNX1-201ENST00000261889 MARCH6O60337 910 aa14.36□□□□□ -0.11
SNX1-201ENST00000261889 IL6STP40189 918 aaPredicted RBP14.36□□□□□ -0.11
SNX1-201ENST00000261889 ECM1Q16610 540 aa14.36□□□□□ -0.11
SNX1-201ENST00000261889 CCDC40Q4G0X9 1142 aa14.36□□□□□ -0.11
SNX1-201ENST00000261889 ODF2Q5BJF6 829 aa14.36□□□□□ -0.11
SNX1-201ENST00000261889 CDK5RAP3Q96JB5 506 aa14.36□□□□□ -0.11
SNX1-201ENST00000261889 CELF4Q9BZC1 486 aaKnown RBP14.36□□□□□ -0.11
SNX1-201ENST00000261889 DDX47Q9H0S4 455 aaKnown RBP14.36□□□□□ -0.11
SNX1-201ENST00000261889 GPCPD1Q9NPB8 672 aa14.36□□□□□ -0.11
SNX1-201ENST00000261889 MEA1Q16626 185 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 KLHDC7AQ5VTJ3 777 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 SAMD1Q6SPF0 538 aaPredicted RBP14.35□□□□□ -0.11
SNX1-201ENST00000261889 MDM1Q8TC05 714 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 MMTAG2Q9BU76 263 aaKnown RBP14.35□□□□□ -0.11
SNX1-201ENST00000261889 LSM14BQ9BX40 385 aaKnown RBP14.35□□□□□ -0.11
SNX1-201ENST00000261889 KBTBD4Q9NVX7 518 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 A0A087WUV0 522 aaPredicted RBP14.35□□□□□ -0.11
SNX1-201ENST00000261889 RAD51CO43502 376 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 RHOBTB3O94955 611 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 SLC16A2P36021 539 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 SNAP25P60880 206 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 KIAA0753Q2KHM9 967 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 GJB7Q6PEY0 223 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 THAP9Q9H5L6 903 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 MAD2L2Q9UI95 211 aa14.35□□□□□ -0.11
SNX1-201ENST00000261889 A0A087X0T9 212 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 TLR2O60603 784 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 FAM228BP0C875 321 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 DHX9Q08211 1270 aaKnown RBP14.34□□□□□ -0.11
SNX1-201ENST00000261889 VWA3BQ502W6 1294 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 TRIM58Q8NG06 486 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 OPLAHO14841 1288 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 BMP15O95972 392 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 OR52Z1P0C646 297 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 ITGA4P13612 1032 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 GUCY2CP25092 1073 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 PRPF4BQ13523 1007 aaKnown RBP14.34□□□□□ -0.11
SNX1-201ENST00000261889 NOC3LQ8WTT2 800 aaKnown RBP14.34□□□□□ -0.11
SNX1-201ENST00000261889 CRNKL1Q9BZJ0 848 aaKnown RBP14.34□□□□□ -0.11
SNX1-201ENST00000261889 PLAAQ9Y263 795 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 CHD4Q14839 1912 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 FLT1P17948 1338 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 CEP104O60308 925 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 TRIM37O94972 964 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 LSP1P33241 339 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 PICALMQ13492 652 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 UBAP2Q5T6F2 1119 aaKnown RBP14.34□□□□□ -0.11
SNX1-201ENST00000261889 MMS22LQ6ZRQ5 1243 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 UBLCP1Q8WVY7 318 aaPredicted RBP14.34□□□□□ -0.11
SNX1-201ENST00000261889 SCLT1Q96NL6 688 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 ALS2CR12Q96Q35 445 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 CAMKK2Q96RR4 588 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 TMEM47Q9BQJ4 181 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 NEUROG2Q9H2A3 272 aa14.34□□□□□ -0.11
SNX1-201ENST00000261889 MEIS1O00470 390 aa14.33□□□□□ -0.11
SNX1-201ENST00000261889 KIAA0754O94854 1291 aa14.33□□□□□ -0.11
SNX1-201ENST00000261889 QPCTQ16769 361 aa14.33□□□□□ -0.11
SNX1-201ENST00000261889 AMIGO3Q86WK7 504 aa14.33□□□□□ -0.11
SNX1-201ENST00000261889 NLRP3Q96P20 1036 aa14.33□□□□□ -0.11
SNX1-201ENST00000261889 STXBP3O00186 592 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 RPS6KA5O75582 802 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 DDAH1O94760 285 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 NTSR2O95665 410 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 CDC25CP30307 473 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 SNX29Q8TEQ0 813 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 AKT1S1Q96B36 256 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 A0A1B0GUL6 1792 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 A0A1W2PQC6 194 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 PDHBP11177 359 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 STAT3P40763 770 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 TUBB2AQ13885 445 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 TCERG1LQ5VWI1 586 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 EHBP1Q8NDI1 1231 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 DDX12PQ92771 950 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 TUBB2BQ9BVA1 445 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 VIPAS39Q9H9C1 493 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 CCDC87Q9NVE4 849 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 SIK3Q9Y2K2 1263 aa14.33□□□□□ -0.12
SNX1-201ENST00000261889 TLDC2A0PJX2 215 aa14.32□□□□□ -0.12
SNX1-201ENST00000261889 USP17L5A8MUK1 530 aa14.32□□□□□ -0.12
SNX1-201ENST00000261889 E9PMD0 336 aa14.32□□□□□ -0.12
SNX1-201ENST00000261889 NR1D1P20393 614 aa14.32□□□□□ -0.12
SNX1-201ENST00000261889 KCNMA1Q12791 1236 aa14.32□□□□□ -0.12
SNX1-201ENST00000261889 TMED8Q6PL24 325 aaPredicted RBP14.32□□□□□ -0.12
SNX1-201ENST00000261889 ZNF444Q8N0Y2 327 aaPredicted RBP14.32□□□□□ -0.12
SNX1-201ENST00000261889 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.32□□□□□ -0.12
SNX1-201ENST00000261889 LRP5O75197 1615 aa14.32□□□□□ -0.12
SNX1-201ENST00000261889 PHF20L1A8MW92 1017 aa14.32□□□□□ -0.12
SNX1-201ENST00000261889 FOXO6A8MYZ6 492 aa14.32□□□□□ -0.12
SNX1-201ENST00000261889 CAMTA2O94983 1202 aa14.32□□□□□ -0.12
SNX1-201ENST00000261889 KIF5BP33176 963 aa14.32□□□□□ -0.12
SNX1-201ENST00000261889 SF3B2Q13435 895 aaKnown RBP14.32□□□□□ -0.12
SNX1-201ENST00000261889 TBC1D10BQ4KMP7 808 aaPredicted RBP14.32□□□□□ -0.12
SNX1-201ENST00000261889 PLAGL2Q9UPG8 496 aa14.32□□□□□ -0.12
SNX1-201ENST00000261889 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.32□□□□□ -0.12
SNX1-201ENST00000261889 CALM1P0DP23 149 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms