RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 KIF5BP33176 963 aa24.35■■□□□ 1.49
NEDD8-201ENST00000250495 IL31RAQ8NI17 732 aa24.35■■□□□ 1.49
NEDD8-201ENST00000250495 LZTS2Q9BRK4 669 aa24.35■■□□□ 1.49
NEDD8-201ENST00000250495 MLXIPQ9HAP2 919 aa24.35■■□□□ 1.49
NEDD8-201ENST00000250495 TET1Q8NFU7 2136 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 STAM2O75886 525 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 DDAH1O94760 285 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 ZNF286BP0CG31 522 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 RBL2Q08999 1139 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 HSDL1Q3SXM5 330 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 GNPTABQ3T906 1256 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 LRRC8DQ7L1W4 858 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 ZNF654Q8IZM8 581 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 RRP36Q96EU6 259 aaKnown RBP24.34■■□□□ 1.49
NEDD8-201ENST00000250495 LY9Q9HBG7 655 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 EYSQ5T1H1 3165 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 TANC1Q9C0D5 1861 aa24.34■■□□□ 1.49
NEDD8-201ENST00000250495 MCM5P33992 734 aa24.33■■□□□ 1.49
NEDD8-201ENST00000250495 KCNJ6P48051 423 aa24.33■■□□□ 1.49
NEDD8-201ENST00000250495 GNAQP50148 359 aa24.33■■□□□ 1.49
NEDD8-201ENST00000250495 SP2Q02086 613 aa24.33■■□□□ 1.49
NEDD8-201ENST00000250495 PTK7Q13308 1070 aa24.33■■□□□ 1.49
NEDD8-201ENST00000250495 PIBF1Q8WXW3 757 aa24.33■■□□□ 1.49
NEDD8-201ENST00000250495 DHX38Q92620 1227 aaKnown RBP24.33■■□□□ 1.49
NEDD8-201ENST00000250495 SPZ1Q9BXG8 430 aa24.33■■□□□ 1.49
NEDD8-201ENST00000250495 PRC1O43663 620 aa24.32■■□□□ 1.48
NEDD8-201ENST00000250495 CA3P07451 260 aa24.32■■□□□ 1.48
NEDD8-201ENST00000250495 CKBP12277 381 aa24.32■■□□□ 1.48
NEDD8-201ENST00000250495 UBA1P22314 1058 aaKnown RBP24.32■■□□□ 1.48
NEDD8-201ENST00000250495 TJAP1Q5JTD0 557 aa24.32■■□□□ 1.48
NEDD8-201ENST00000250495 NFXL1Q6ZNB6 911 aa24.32■■□□□ 1.48
NEDD8-201ENST00000250495 HERC6Q8IVU3 1022 aa24.32■■□□□ 1.48
NEDD8-201ENST00000250495 CUL5Q93034 780 aa24.32■■□□□ 1.48
NEDD8-201ENST00000250495 ZFP91Q96JP5 570 aaPredicted RBP24.32■■□□□ 1.48
NEDD8-201ENST00000250495 TMEM87BQ96K49 555 aa24.32■■□□□ 1.48
NEDD8-201ENST00000250495 PRUNE2Q8WUY3 3088 aa24.31■■□□□ 1.48
NEDD8-201ENST00000250495 SORBS3O60504 671 aa24.31■■□□□ 1.48
NEDD8-201ENST00000250495 ICAM3P32942 547 aa24.31■■□□□ 1.48
NEDD8-201ENST00000250495 CCDC85BQ15834 202 aaPredicted RBP24.31■■□□□ 1.48
NEDD8-201ENST00000250495 SMARCC2Q8TAQ2 1214 aa24.31■■□□□ 1.48
NEDD8-201ENST00000250495 ATXN2LQ8WWM7 1075 aaKnown RBP24.31■■□□□ 1.48
NEDD8-201ENST00000250495 LSG1Q9H089 658 aaKnown RBP24.31■■□□□ 1.48
NEDD8-201ENST00000250495 SEC63Q9UGP8 760 aaKnown RBP24.31■■□□□ 1.48
NEDD8-201ENST00000250495 CCDC69A6NI79 296 aa24.3■■□□□ 1.48
NEDD8-201ENST00000250495 CXCL10P02778 98 aa24.3■■□□□ 1.48
NEDD8-201ENST00000250495 NEDD9Q14511 834 aa24.3■■□□□ 1.48
NEDD8-201ENST00000250495 GPNMBQ14956 572 aa24.3■■□□□ 1.48
NEDD8-201ENST00000250495 CNKSR3Q6P9H4 555 aa24.3■■□□□ 1.48
NEDD8-201ENST00000250495 GPKOWQ92917 476 aaPredicted RBP eCLIP24.3■■□□□ 1.48
NEDD8-201ENST00000250495 C16orf70Q9BSU1 422 aa24.3■■□□□ 1.48
NEDD8-201ENST00000250495 MYL10Q9BUA6 226 aa24.3■■□□□ 1.48
NEDD8-201ENST00000250495 PRDM6Q9NQX0 595 aa24.3■■□□□ 1.48
NEDD8-201ENST00000250495 FRMPD4Q14CM0 1322 aa24.3■■□□□ 1.48
NEDD8-201ENST00000250495 CALM1P0DP23 149 aa24.29■■□□□ 1.48
NEDD8-201ENST00000250495 CALM2P0DP24 149 aa24.29■■□□□ 1.48
NEDD8-201ENST00000250495 CALM3P0DP25 149 aa24.29■■□□□ 1.48
NEDD8-201ENST00000250495 LIFRP42702 1097 aa24.29■■□□□ 1.48
NEDD8-201ENST00000250495 MRPS9P82933 396 aaKnown RBP24.29■■□□□ 1.48
NEDD8-201ENST00000250495 XRRA1Q6P2D8 792 aa24.29■■□□□ 1.48
NEDD8-201ENST00000250495 INPP4AQ96PE3 977 aaPredicted RBP24.29■■□□□ 1.48
NEDD8-201ENST00000250495 ESYT1Q9BSJ8 1104 aa24.29■■□□□ 1.48
NEDD8-201ENST00000250495 TSPYL2Q9H2G4 693 aaPredicted RBP24.29■■□□□ 1.48
NEDD8-201ENST00000250495 THEGQ9P2T0 379 aa24.29■■□□□ 1.48
NEDD8-201ENST00000250495 CHD9Q3L8U1 2897 aa24.28■■□□□ 1.48
NEDD8-201ENST00000250495 SPATA31C2B4DYI2 1134 aa24.28■■□□□ 1.48
NEDD8-201ENST00000250495 H3BRB1 525 aa24.28■■□□□ 1.48
NEDD8-201ENST00000250495 PIK3CDO00329 1044 aa24.28■■□□□ 1.48
NEDD8-201ENST00000250495 NOP56O00567 594 aaKnown RBP24.28■■□□□ 1.48
NEDD8-201ENST00000250495 SH2B2O14492 632 aaPredicted RBP24.28■■□□□ 1.48
NEDD8-201ENST00000250495 SLC27A2O14975 620 aa24.28■■□□□ 1.48
NEDD8-201ENST00000250495 NBNO60934 754 aa24.28■■□□□ 1.48
NEDD8-201ENST00000250495 ZNF200P98182 395 aaPredicted RBP24.28■■□□□ 1.48
NEDD8-201ENST00000250495 USP26Q9BXU7 913 aa24.28■■□□□ 1.48
NEDD8-201ENST00000250495 TUT1Q9H6E5 874 aaKnown RBP24.28■■□□□ 1.48
NEDD8-201ENST00000250495 RTEL1Q9NZ71 1219 aa24.28■■□□□ 1.48
NEDD8-201ENST00000250495 ABHD14A-ACY1A0A1B0GW23 586 aa24.27■■□□□ 1.48
NEDD8-201ENST00000250495 FIBPO43427 364 aa24.27■■□□□ 1.48
NEDD8-201ENST00000250495 TLL1O43897 1013 aa24.27■■□□□ 1.48
NEDD8-201ENST00000250495 EFCAB14O75071 495 aa24.27■■□□□ 1.48
NEDD8-201ENST00000250495 WDR5P61964 334 aaKnown RBP24.27■■□□□ 1.48
NEDD8-201ENST00000250495 NECTIN1Q15223 517 aa24.27■■□□□ 1.48
NEDD8-201ENST00000250495 TRIM71Q2Q1W2 868 aaKnown RBP24.27■■□□□ 1.48
NEDD8-201ENST00000250495 ZNF618Q5T7W0 954 aa24.27■■□□□ 1.48
NEDD8-201ENST00000250495 CREB3L3Q68CJ9 461 aa24.27■■□□□ 1.48
NEDD8-201ENST00000250495 USP17L6PQ6QN14 398 aa24.27■■□□□ 1.48
NEDD8-201ENST00000250495 METTL7BQ6UX53 244 aa24.27■■□□□ 1.48
NEDD8-201ENST00000250495 C17orf102A2RUQ5 167 aa24.26■■□□□ 1.47
NEDD8-201ENST00000250495 GTPBP6O43824 516 aaPredicted RBP24.26■■□□□ 1.47
NEDD8-201ENST00000250495 POU3F3P20264 500 aaPredicted RBP24.26■■□□□ 1.47
NEDD8-201ENST00000250495 TAP1Q03518 808 aa24.26■■□□□ 1.47
NEDD8-201ENST00000250495 IKBKEQ14164 716 aa24.26■■□□□ 1.47
NEDD8-201ENST00000250495 PCNX4Q63HM2 1172 aa24.26■■□□□ 1.47
NEDD8-201ENST00000250495 CYFIP1Q7L576 1253 aa24.26■■□□□ 1.47
NEDD8-201ENST00000250495 NLRX1Q86UT6 975 aa24.26■■□□□ 1.47
NEDD8-201ENST00000250495 SRBD1Q8N5C6 995 aaKnown RBP24.26■■□□□ 1.47
NEDD8-201ENST00000250495 ZBED2Q9BTP6 218 aa24.26■■□□□ 1.47
NEDD8-201ENST00000250495 BCAS3Q9H6U6 928 aa24.26■■□□□ 1.47
NEDD8-201ENST00000250495 CERS4Q9HA82 394 aa24.26■■□□□ 1.47
NEDD8-201ENST00000250495 SLC12A7Q9Y666 1083 aa24.26■■□□□ 1.47
NEDD8-201ENST00000250495 MEIS2O14770 477 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms