RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 TMEM40Q8WWA1 233 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 DDX17Q92841 729 aaKnown RBP9.2□□□□□ -0.94
CXCR4-201ENST00000241393 NAP1L5Q96NT1 182 aaPredicted RBP9.2□□□□□ -0.94
CXCR4-201ENST00000241393 NEK1Q96PY6 1258 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 DBNDD2Q9BQY9 259 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 GSX1Q9H4S2 264 aaPredicted RBP9.2□□□□□ -0.94
CXCR4-201ENST00000241393 DISC1Q9NRI5 854 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 PCOLCE2Q9UKZ9 415 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 ZNF609O15014 1411 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 MEIS3P2A8K0S8 358 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 FIBPO43427 364 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 CDK8P49336 464 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 MAP7Q14244 749 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 ADGRE1Q14246 886 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 CCDC81Q6ZN84 652 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 BRINP3Q76B58 766 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 TXNRD3Q86VQ6 643 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 SMYD4Q8IYR2 804 aaPredicted RBP9.2□□□□□ -0.94
CXCR4-201ENST00000241393 C19orf47Q8N9M1 422 aaKnown RBP9.2□□□□□ -0.94
CXCR4-201ENST00000241393 C2CD4AQ8NCU7 369 aaPredicted RBP9.2□□□□□ -0.94
CXCR4-201ENST00000241393 LLPHQ9BRT6 129 aaKnown RBP9.2□□□□□ -0.94
CXCR4-201ENST00000241393 FUCA2Q9BTY2 467 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 DSCC1Q9BVC3 393 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 SCAND2PQ9GZW5 306 aaPredicted RBP9.2□□□□□ -0.94
CXCR4-201ENST00000241393 ZNF408Q9H9D4 720 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 PRDM11Q9NQV5 511 aa9.2□□□□□ -0.94
CXCR4-201ENST00000241393 TJP1Q07157 1748 aa9.19□□□□□ -0.94
CXCR4-201ENST00000241393 ABCC12Q96J65 1359 aa9.19□□□□□ -0.94
CXCR4-201ENST00000241393 VPS37CA5D8V6 355 aaPredicted RBP9.19□□□□□ -0.94
CXCR4-201ENST00000241393 EYA2O00167 538 aa9.19□□□□□ -0.94
CXCR4-201ENST00000241393 IL2RBP14784 551 aa9.19□□□□□ -0.94
CXCR4-201ENST00000241393 COL8A1P27658 744 aa9.19□□□□□ -0.94
CXCR4-201ENST00000241393 IREB2P48200 963 aaKnown RBP9.19□□□□□ -0.94
CXCR4-201ENST00000241393 TTLL4Q14679 1199 aa9.19□□□□□ -0.94
CXCR4-201ENST00000241393 ATG9AQ7Z3C6 839 aa9.19□□□□□ -0.94
CXCR4-201ENST00000241393 NECAB1Q8N987 351 aa9.19□□□□□ -0.94
CXCR4-201ENST00000241393 GTF3C6Q969F1 213 aa9.19□□□□□ -0.94
CXCR4-201ENST00000241393 SHDQ96IW2 340 aa9.19□□□□□ -0.94
CXCR4-201ENST00000241393 DNAJC2Q99543 621 aaKnown RBP9.19□□□□□ -0.94
CXCR4-201ENST00000241393 TEX13AQ9BXU3 409 aaPredicted RBP9.19□□□□□ -0.94
CXCR4-201ENST00000241393 ACTL7BQ9Y614 415 aa9.19□□□□□ -0.94
CXCR4-201ENST00000241393 DRD2P14416 443 aa9.18□□□□□ -0.94
CXCR4-201ENST00000241393 MBTPS1Q14703 1052 aa9.18□□□□□ -0.94
CXCR4-201ENST00000241393 TOM1L2Q6ZVM7 507 aa9.18□□□□□ -0.94
CXCR4-201ENST00000241393 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.18□□□□□ -0.94
CXCR4-201ENST00000241393 MRPL41Q8IXM3 137 aaKnown RBP9.18□□□□□ -0.94
CXCR4-201ENST00000241393 FBXL16Q8N461 479 aa9.18□□□□□ -0.94
CXCR4-201ENST00000241393 TAB3Q8N5C8 712 aaPredicted RBP9.18□□□□□ -0.94
CXCR4-201ENST00000241393 FAM13CQ8NE31 585 aa9.18□□□□□ -0.94
CXCR4-201ENST00000241393 GIMAP7Q8NHV1 300 aa9.18□□□□□ -0.94
CXCR4-201ENST00000241393 ISCA1Q9BUE6 129 aa9.18□□□□□ -0.94
CXCR4-201ENST00000241393 AGXT2Q9BYV1 514 aa9.18□□□□□ -0.94
CXCR4-201ENST00000241393 KIF3AQ9Y496 699 aa9.18□□□□□ -0.94
CXCR4-201ENST00000241393 MRVI1Q9Y6F6 885 aa9.18□□□□□ -0.94
CXCR4-201ENST00000241393 XIRP1Q702N8 1843 aaKnown RBP9.17□□□□□ -0.94
CXCR4-201ENST00000241393 RAG1P15918 1043 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 NOS3P29474 1203 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 CAP2P40123 477 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 ZMYM1Q5SVZ6 1142 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 TTLL7Q6ZT98 887 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 ANKS3Q6ZW76 656 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 MCATQ8IVS2 390 aaKnown RBP9.17□□□□□ -0.94
CXCR4-201ENST00000241393 UTP4Q969X6 686 aaKnown RBP9.17□□□□□ -0.94
CXCR4-201ENST00000241393 EDC3Q96F86 508 aaKnown RBP9.17□□□□□ -0.94
CXCR4-201ENST00000241393 PLA2G12BQ9BX93 195 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 ZSCAN16Q9H4T2 348 aaPredicted RBP9.17□□□□□ -0.94
CXCR4-201ENST00000241393 PAG1Q9NWQ8 432 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 ACTR10Q9NZ32 417 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 KLHL3Q9UH77 587 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 CORINQ9Y5Q5 1042 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 SHANK3Q9BYB0 1731 aa9.17□□□□□ -0.94
CXCR4-201ENST00000241393 PFKFB2O60825 505 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 ALX3O95076 343 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 CYP21A2P08686 494 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 CCDC192P0DO97 292 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 HCLS1P14317 486 aaPredicted RBP9.16□□□□□ -0.94
CXCR4-201ENST00000241393 CCNFP41002 786 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 PREPP48147 710 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 PIP4K2AP48426 406 aaPredicted RBP9.16□□□□□ -0.94
CXCR4-201ENST00000241393 HMGN5P82970 282 aaKnown RBP9.16□□□□□ -0.94
CXCR4-201ENST00000241393 ATL3Q6DD88 541 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.16□□□□□ -0.94
CXCR4-201ENST00000241393 TTC6Q86TZ1 520 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 SMARCC2Q8TAQ2 1214 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 FAM46AQ96IP4 442 aaKnown RBP9.16□□□□□ -0.94
CXCR4-201ENST00000241393 TMEM87BQ96K49 555 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 DDX19AQ9NUU7 478 aaKnown RBP9.16□□□□□ -0.94
CXCR4-201ENST00000241393 TAF6LQ9Y6J9 622 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 ABCA3Q99758 1704 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 TPM3P06753 285 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 ZFYP08048 801 aaPredicted RBP9.16□□□□□ -0.94
CXCR4-201ENST00000241393 RAB6AP20340 208 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 RXRBP28702 533 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 TCIRG1Q13488 830 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 NAA16Q6N069 864 aaPredicted RBP9.16□□□□□ -0.94
CXCR4-201ENST00000241393 DDX46Q7L014 1031 aaKnown RBP9.16□□□□□ -0.94
CXCR4-201ENST00000241393 NLRC3Q7RTR2 1065 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 LSRQ86X29 649 aaPredicted RBP9.16□□□□□ -0.94
CXCR4-201ENST00000241393 SIRPGQ9P1W8 387 aa9.16□□□□□ -0.94
CXCR4-201ENST00000241393 STRCQ7RTU9 1775 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms