RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Sertad1Q9JL10 236 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Pdzd4Q9QY39 772 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Trove2O08848 538 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Snai1Q02085 264 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Znf219Q6IQX8 726 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Scfd1Q8BRF7 639 aaKnown RBP16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 AdarQ99MU3 1178 aaKnown RBP16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 CsadQ9DBE0 493 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Vnn1Q9Z0K8 512 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Speer2E9Q9U2 264 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Surf1P09925 306 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Rfc1P35601 1131 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Tlr8P58682 1032 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Aak1Q3UHJ0 959 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 HarsQ61035 509 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Ints8Q80V86 995 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Tc2nQ91XT6 489 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Dbndd2Q9CRD4 158 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Mageb2A2AHM0 380 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Tpp1O89023 562 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Gfpt1P47856 697 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Mtus1Q5HZI1 1210 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 GartQ64737 1010 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Nop56Q9D6Z1 580 aaKnown RBP16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Tpcn1Q9EQJ0 817 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Cacna2d3Q9Z1L5 1091 aa16.95■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Crb1Q8VHS2 1405 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Npy5rO70342 466 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Rc3h1Q4VGL6 1130 aaKnown RBP16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Churc1Q6DG52 112 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Cog5Q8C0L8 829 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Gad1P48318 593 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 SbdsP70122 250 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 TchpQ3TVW5 497 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Crybg3Q80W49 1005 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Q8C5C9 218 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 E4f1Q8CCE9 783 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Zcchc17Q9ESX4 241 aaKnown RBP16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 NfixP70257 488 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Senp6Q6P7W0 1132 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Brd2Q7JJ13 798 aaKnown RBP16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Trerf1Q8BXJ2 1205 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Prpf6Q91YR7 941 aaKnown RBP16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Lrrc74aA0A1Y7VMD6 494 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Ncf2O70145 525 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Calb1P12658 261 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Ercc5P35689 1170 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Alpk1Q9CXB8 1231 aa16.94■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Prl2c1Q5SVL9 228 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Sumf1Q8R0F3 372 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Psmd2Q8VDM4 908 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Yipf1Q91VU1 306 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Thap12Q9CUX1 758 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Krt71Q9R0H5 524 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Gm6121L7MUF1 212 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Foxn3Q499D0 457 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Pnma5Q5DTT8 618 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Slitrk3Q810B9 980 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Gm4297D3YWB7 211 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Ctnna1P26231 906 aaKnown RBP16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Sec31aQ3UPL0 1230 aaKnown RBP16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Dync1li2Q6PDL0 492 aaKnown RBP16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Cep95Q8BVV7 827 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Arhgap24Q8C4V1 747 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Spire2Q8K1S6 718 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Prkab1Q9R078 270 aa16.93■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Kif23E9Q5G3 953 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Sec24cG3X972 1096 aaKnown RBP16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Camk4P08414 469 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Xrcc6P23475 608 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Chp1P61022 195 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Slc8a1P70414 970 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 SkiQ60698 725 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Glis3Q6XP49 780 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Ttc26Q8BS45 554 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Ciapin1Q8WTY4 309 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Dnaaf5B9EJR8 853 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Mars2Q499X9 586 aaKnown RBP16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Cct6bQ61390 531 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Slc12a8Q8VI23 705 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Ess2O70279 479 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Rnaseh1O70338 285 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Sem1P60897 70 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Irx1P81068 480 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Wdr44Q6NVE8 915 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Mad2l2Q9D752 211 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 AatfQ9JKX4 526 aaKnown RBP16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Sparcl1P70663 650 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Vmn1r209Q5NC97 312 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Atad3Q925I1 591 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Krt20Q9D312 431 aa16.92■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Rnf40Q3U319 1001 aa16.91■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Pla2g4eQ50L42 875 aa16.91■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Serpinb1cQ5SV42 375 aa16.91■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Trim21Q62191 470 aa16.91■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Prc1Q99K43 603 aaKnown RBP16.91■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Cdr1E9Q0B4 517 aa16.91■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 LbrQ3U9G9 626 aaKnown RBP16.91■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Krt74Q6IFZ9 495 aa16.91■□□□□ 0.3
Ccdc88b-201ENSMUST00000113440 Creld2Q9CYA0 350 aa16.91■□□□□ 0.3
Retrieved 100 of 22,080 RNA–protein pairs in 55.9 ms