RNA–Protein interactions for RNA: ENST00000641597.1

PHGDH-223, Transcript of phosphoglycerate dehydrogenase, human

APPRIS P1 BASIC

Gene PHGDH, Length 2,585 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-223	ENST00000641597	UBAP1L	F5GYI3	381 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	MOCS3	O95396	460 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	PLCG2	P16885	1265 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	SHMT1	P34896	483 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	EIF4A3	P38919	411 aa	Known RBP	18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	NOV	P48745	357 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	AMPD3	Q01432	767 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	TCP10	Q12799	353 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	NELFCD	Q8IXH7	590 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	COG1	Q8WTW3	980 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	CCDC42	Q96M95	316 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	ERGIC2	Q96RQ1	377 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	CRACR2A	Q9BSW2	395 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	USP40	Q9NVE5	1235 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	MYH7B	A7E2Y1	1941 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	NHS	Q6T4R5	1651 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	CYLC1	P35663	651 aa	Predicted RBP	18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	STAT3	P40763	770 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	LMAN1	P49257	510 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	ZNF543	Q08ER8	600 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	KCTD19	Q17RG1	926 aa	Predicted RBP	18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	LRRC55	Q6ZSA7	311 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	UNC13D	Q70J99	1090 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	NOC3L	Q8WTT2	800 aa	Known RBP	18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	RIN2	Q8WYP3	895 aa	Predicted RBP	18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	FAM163A	Q96GL9	167 aa	Predicted RBP	18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	NLRC4	Q9NPP4	1024 aa		18.71	■□□□□ 0.59
PHGDH-223	ENST00000641597	EIF3CL	B5ME19	914 aa	Known RBP	18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	NCK2	O43639	380 aa		18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	KRT86	O43790	486 aa		18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	FXR2	P51116	673 aa	Known RBP eCLIP	18.7	■□□□□ 0.58	1e-6	■■■■□ 19.3
PHGDH-223	ENST00000641597	KRT83	P78385	493 aa		18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	FKBP15	Q5T1M5	1219 aa		18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	HDAC7	Q8WUI4	952 aa		18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	EIF3C	Q99613	913 aa	Known RBP	18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	TANGO6	Q9C0B7	1094 aa		18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	MAGEF1	Q9HAY2	307 aa		18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	DDX25	Q9UHL0	483 aa	Known RBP	18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	ENOX2	Q16206	610 aa	Known RBP	18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	PAPD7	Q5XG87	772 aa	Known RBP	18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	CCDC102A	Q96A19	550 aa		18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	BCAS3	Q9H6U6	928 aa		18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	SERPINB13	Q9UIV8	391 aa		18.7	■□□□□ 0.58
PHGDH-223	ENST00000641597	ESYT2	A0FGR8	921 aa		18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	SNHG28	P0DPA3	235 aa		18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	MATR3	P43243	847 aa	Known RBP eCLIP	18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	USP14	P54578	494 aa		18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	GFPT1	Q06210	699 aa	Predicted RBP	18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	KRT79	Q5XKE5	535 aa		18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	CAGE1	Q8TC20	777 aa		18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	IFIH1	Q9BYX4	1025 aa	Known RBP	18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	PLEKHA4	Q9H4M7	779 aa		18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	LY75	O60449	1722 aa		18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	IGKV6D-41	A0A0C4DH26	115 aa		18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	KIF11	P52732	1056 aa		18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	FAM114A1	Q8IWE2	563 aa		18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	P2RX7	Q99572	595 aa	Known RBP	18.69	■□□□□ 0.58
PHGDH-223	ENST00000641597	IPO7	O95373	1038 aa	Known RBP	18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	TTLL1	O95922	423 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	DNA2	P51530	1060 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	KIF5A	Q12840	1032 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	TMEM266	Q2M3C6	531 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	DNAJC19	Q96DA6	116 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	NUP58	Q9BVL2	599 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	DNAJC18	Q9H819	358 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	PLAGL2	Q9UPG8	496 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	PCDHA13	Q9Y5I0	950 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	POTEB3	A0JP26	581 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	POTEC	B2RU33	542 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	MARCH6	O60337	910 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	ERLIN1	O75477	346 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	TNNT3	P45378	269 aa	Predicted RBP	18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	VAV2	P52735	878 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	KCNMA1	Q12791	1236 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	COASY	Q13057	564 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	TUBB2A	Q13885	445 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	ASPRV1	Q53RT3	343 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	CDC42EP5	Q6NZY7	148 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	NFRKB	Q6P4R8	1299 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	POTEB	Q6S5H4	581 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	SLC30A10	Q6XR72	485 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	TUBB2B	Q9BVA1	445 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	KIAA1024	Q9UPX6	916 aa		18.68	■□□□□ 0.58
PHGDH-223	ENST00000641597	PNMA6F	A0A0J9YX94	578 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	BUB1	O43683	1085 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	BBOX1	O75936	387 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	ARID5A	Q03989	594 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	DNAAF5	Q86Y56	855 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	RETREG2	Q8NC44	543 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	BAP1	Q92560	729 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	SECISBP2L	Q93073	1101 aa	Known RBP	18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	RIC8A	Q9NPQ8	531 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	PODXL2	Q9NZ53	605 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	POLRMT	O00411	1230 aa	Known RBP	18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	PPEF1	O14829	653 aa	Predicted RBP	18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	AKR1B10	O60218	316 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	EHHADH	Q08426	723 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	SPA17	Q15506	151 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	TMEM119	Q4V9L6	283 aa		18.67	■□□□□ 0.58
PHGDH-223	ENST00000641597	PURB	Q96QR8	312 aa	Known RBP	18.67	■□□□□ 0.58

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