RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 CCDC62Q6P9F0 684 aa15.93■□□□□ 0.14
PNKP-228ENST00000637325 SLC43A3Q8NBI5 491 aa15.93■□□□□ 0.14
PNKP-228ENST00000637325 LRCH3Q96II8 777 aa15.93■□□□□ 0.14
PNKP-228ENST00000637325 JAKMIP1Q96N16 626 aaKnown RBP15.93■□□□□ 0.14
PNKP-228ENST00000637325 RBM28Q9NW13 759 aaKnown RBP15.93■□□□□ 0.14
PNKP-228ENST00000637325 MYO9BQ13459 2157 aa15.93■□□□□ 0.14
PNKP-228ENST00000637325 A6NJR5 290 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 ITGB8P26012 769 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 HSPA4P34932 840 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 PURAQ00577 322 aaKnown RBP15.92■□□□□ 0.14
PNKP-228ENST00000637325 SHHQ15465 462 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 RTN1Q16799 776 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 KCNV1Q6PIU1 500 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 APOA5Q6Q788 366 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 BLOC1S2Q6QNY1 142 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 TMTC3Q6ZXV5 915 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 PPP1R12CQ9BZL4 782 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 DDX41Q9UJV9 622 aaKnown RBP15.92■□□□□ 0.14
PNKP-228ENST00000637325 TBX21Q9UL17 535 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 GRIN2DO15399 1336 aa15.92■□□□□ 0.14
PNKP-228ENST00000637325 KLF18A0A0U1RQI7 1052 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 hCG_1642624A0A1W2PR95 340 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 CD4P01730 458 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 CHMP4BP1P59074 171 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 FAM47CQ5HY64 1035 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 VSIG10LQ86VR7 867 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 AFG1LQ8WV93 481 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 KCNB2Q92953 911 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 BRPF3Q9ULD4 1205 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 SNX14Q9Y5W7 946 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 LAMA3Q16787 3333 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 SZT2Q5T011 3432 aa15.91■□□□□ 0.14
PNKP-228ENST00000637325 GOLGA8AA7E2F4 631 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 GOLGA8BA8MQT2 603 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 MMP3P08254 477 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 CPA1P15085 419 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 CASTP20810 708 aaKnown RBP15.9■□□□□ 0.14
PNKP-228ENST00000637325 PSMA5P28066 241 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 ARHGAP1Q07960 439 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 PPIGQ13427 754 aaKnown RBP eCLIP15.9■□□□□ 0.141e-9■■■■■ 31.7
PNKP-228ENST00000637325 LAMC2Q13753 1193 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 C9orf50Q5SZB4 431 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 MFSD5Q6N075 450 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 USP17L6PQ6QN14 398 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 Q6ZUG5 572 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 HEATR3Q7Z4Q2 680 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 DHX37Q8IY37 1157 aaKnown RBP15.9■□□□□ 0.14
PNKP-228ENST00000637325 TMEM199Q8N511 208 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 IL31RAQ8NI17 732 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 ZFP91Q96JP5 570 aaPredicted RBP15.9■□□□□ 0.14
PNKP-228ENST00000637325 TRPV6Q9H1D0 765 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 PSTPIP2Q9H939 334 aa15.9■□□□□ 0.14
PNKP-228ENST00000637325 PIK3CDO00329 1044 aa15.89■□□□□ 0.13
PNKP-228ENST00000637325 B4GALT4O60513 344 aa15.89■□□□□ 0.13
PNKP-228ENST00000637325 SUPT20HL2P0C7V6 817 aa15.89■□□□□ 0.13
PNKP-228ENST00000637325 DGKDQ16760 1214 aa15.89■□□□□ 0.13
PNKP-228ENST00000637325 NBPF20Q3BBV1 942 aa15.89■□□□□ 0.13
PNKP-228ENST00000637325 GNPTABQ3T906 1256 aa15.89■□□□□ 0.13
PNKP-228ENST00000637325 ALDH8A1Q9H2A2 487 aaPredicted RBP15.89■□□□□ 0.13
PNKP-228ENST00000637325 HIPK3Q9H422 1215 aa15.89■□□□□ 0.13
PNKP-228ENST00000637325 SORBS3O60504 671 aa15.88■□□□□ 0.13
PNKP-228ENST00000637325 STAM2O75886 525 aa15.88■□□□□ 0.13
PNKP-228ENST00000637325 TGFB3P10600 412 aa15.88■□□□□ 0.13
PNKP-228ENST00000637325 CYP2C18P33260 490 aa15.88■□□□□ 0.13
PNKP-228ENST00000637325 APOBRQ0VD83 1088 aa15.88■□□□□ 0.13
PNKP-228ENST00000637325 GPR153Q6NV75 609 aa15.88■□□□□ 0.13
PNKP-228ENST00000637325 NFRKBQ6P4R8 1299 aa15.88■□□□□ 0.13
PNKP-228ENST00000637325 RNPC3Q96LT9 517 aaKnown RBP15.88■□□□□ 0.13
PNKP-228ENST00000637325 MLXIPQ9HAP2 919 aa15.88■□□□□ 0.13
PNKP-228ENST00000637325 TRMT13Q9NUP7 481 aaKnown RBP15.88■□□□□ 0.13
PNKP-228ENST00000637325 SCN5AQ14524 2016 aa15.88■□□□□ 0.13
PNKP-228ENST00000637325 CCDC196A0A1B0GTZ2 297 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 MEIS2O14770 477 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 EPB41L2O43491 1005 aaKnown RBP15.87■□□□□ 0.13
PNKP-228ENST00000637325 RGS20O76081 388 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 GGPS1O95749 300 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 RPS6KB1P23443 525 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 METAP2P50579 478 aaKnown RBP eCLIP15.87■□□□□ 0.13
PNKP-228ENST00000637325 RCAN1P53805 252 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 EPHB4P54760 987 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 CELF3Q5SZQ8 465 aaKnown RBP15.87■□□□□ 0.13
PNKP-228ENST00000637325 PPTC7Q8NI37 304 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 PPP1R13LQ8WUF5 828 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 GPKOWQ92917 476 aaPredicted RBP eCLIP15.87■□□□□ 0.13
PNKP-228ENST00000637325 BRF1Q92994 677 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 EMID1Q96A84 441 aaPredicted RBP15.87■□□□□ 0.13
PNKP-228ENST00000637325 SPATA33Q96N06 139 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 RTEL1Q9NZ71 1219 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 NOD1Q9Y239 953 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 V9GY48 417 aaPredicted RBP15.87■□□□□ 0.13
PNKP-228ENST00000637325 FRMPD4Q14CM0 1322 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 CNTNAP5Q8WYK1 1306 aa15.87■□□□□ 0.13
PNKP-228ENST00000637325 SPDYE3A6NKU9 549 aa15.86■□□□□ 0.13
PNKP-228ENST00000637325 CSF2RAP15509 400 aa15.86■□□□□ 0.13
PNKP-228ENST00000637325 NAPAP54920 295 aa15.86■□□□□ 0.13
PNKP-228ENST00000637325 CCL23P55773 120 aa15.86■□□□□ 0.13
PNKP-228ENST00000637325 MRPS9P82933 396 aaKnown RBP15.86■□□□□ 0.13
PNKP-228ENST00000637325 PTPN11Q06124 597 aaPredicted RBP15.86■□□□□ 0.13
PNKP-228ENST00000637325 MYSM1Q5VVJ2 828 aa15.86■□□□□ 0.13
PNKP-228ENST00000637325 XRRA1Q6P2D8 792 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms