RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PXMP2Q9NR77 195 aa18.82■□□□□ 0.6
CLN3-246ENST00000636228 MAD2L2Q9UI95 211 aa18.82■□□□□ 0.6
CLN3-246ENST00000636228 DDX41Q9UJV9 622 aaKnown RBP18.82■□□□□ 0.6
CLN3-246ENST00000636228 PITPNM1O00562 1244 aa18.81■□□□□ 0.6
CLN3-246ENST00000636228 EIF3JO75822 258 aaKnown RBP18.81■□□□□ 0.6
CLN3-246ENST00000636228 ARHGEF15O94989 841 aa18.81■□□□□ 0.6
CLN3-246ENST00000636228 MYCLP12524 364 aaPredicted RBP18.81■□□□□ 0.6
CLN3-246ENST00000636228 ACTN1P12814 892 aa18.81■□□□□ 0.6
CLN3-246ENST00000636228 HOXA13P31271 388 aaPredicted RBP18.81■□□□□ 0.6
CLN3-246ENST00000636228 BFSP2Q13515 415 aa18.81■□□□□ 0.6
CLN3-246ENST00000636228 SLC35G1Q2M3R5 365 aa18.81■□□□□ 0.6
CLN3-246ENST00000636228 TMEM67Q5HYA8 995 aa18.81■□□□□ 0.6
CLN3-246ENST00000636228 ALG1Q9BT22 464 aa18.81■□□□□ 0.6
CLN3-246ENST00000636228 SENP2Q9HC62 589 aa18.81■□□□□ 0.6
CLN3-246ENST00000636228 MRVI1Q9Y6F6 885 aa18.81■□□□□ 0.6
CLN3-246ENST00000636228 CASTP20810 708 aaKnown RBP18.8■□□□□ 0.6
CLN3-246ENST00000636228 RFC2P35250 354 aa18.8■□□□□ 0.6
CLN3-246ENST00000636228 PTH1RQ03431 593 aa18.8■□□□□ 0.6
CLN3-246ENST00000636228 GPNMBQ14956 572 aa18.8■□□□□ 0.6
CLN3-246ENST00000636228 TMCO2Q7Z6W1 182 aaPredicted RBP18.8■□□□□ 0.6
CLN3-246ENST00000636228 HOMER1Q86YM7 354 aa18.8■□□□□ 0.6
CLN3-246ENST00000636228 DHX38Q92620 1227 aaKnown RBP18.8■□□□□ 0.6
CLN3-246ENST00000636228 ASB2Q96Q27 587 aa18.8■□□□□ 0.6
CLN3-246ENST00000636228 MAF1Q9H063 256 aa18.8■□□□□ 0.6
CLN3-246ENST00000636228 THEGQ9P2T0 379 aa18.8■□□□□ 0.6
CLN3-246ENST00000636228 HDAC6Q9UBN7 1215 aa18.8■□□□□ 0.6
CLN3-246ENST00000636228 PCDHA1Q9Y5I3 950 aa18.8■□□□□ 0.6
CLN3-246ENST00000636228 TAF6LQ9Y6J9 622 aa18.8■□□□□ 0.6
CLN3-246ENST00000636228 PALM3A6NDB9 673 aaPredicted RBP18.79■□□□□ 0.6
CLN3-246ENST00000636228 EPOPA6NHQ4 379 aa18.79■□□□□ 0.6
CLN3-246ENST00000636228 RGS20O76081 388 aa18.79■□□□□ 0.6
CLN3-246ENST00000636228 ZNF286BP0CG31 522 aa18.79■□□□□ 0.6
CLN3-246ENST00000636228 PSEN2P49810 448 aa18.79■□□□□ 0.6
CLN3-246ENST00000636228 HSD17B4P51659 736 aa18.79■□□□□ 0.6
CLN3-246ENST00000636228 DGKDQ16760 1214 aa18.79■□□□□ 0.6
CLN3-246ENST00000636228 TTC22Q5TAA0 569 aa18.79■□□□□ 0.6
CLN3-246ENST00000636228 ATXN2LQ8WWM7 1075 aaKnown RBP18.79■□□□□ 0.6
CLN3-246ENST00000636228 MTMR8Q96EF0 704 aa18.79■□□□□ 0.6
CLN3-246ENST00000636228 ZBTB5O15062 677 aa18.78■□□□□ 0.6
CLN3-246ENST00000636228 ZNF200P98182 395 aaPredicted RBP18.78■□□□□ 0.6
CLN3-246ENST00000636228 KRT40Q6A162 431 aa18.78■□□□□ 0.6
CLN3-246ENST00000636228 SPRED2Q7Z698 418 aa18.78■□□□□ 0.6
CLN3-246ENST00000636228 HERC6Q8IVU3 1022 aa18.78■□□□□ 0.6
CLN3-246ENST00000636228 DHX37Q8IY37 1157 aaKnown RBP18.78■□□□□ 0.6
CLN3-246ENST00000636228 IL31RAQ8NI17 732 aa18.78■□□□□ 0.6
CLN3-246ENST00000636228 PIGSQ96S52 555 aa18.78■□□□□ 0.6
CLN3-246ENST00000636228 SLC9A7Q96T83 725 aa18.78■□□□□ 0.6
CLN3-246ENST00000636228 PDCD2LQ9BRP1 358 aa18.78■□□□□ 0.6
CLN3-246ENST00000636228 SUPT16HQ9Y5B9 1047 aaKnown RBP18.78■□□□□ 0.6
CLN3-246ENST00000636228 IFIT3O14879 490 aaKnown RBP18.77■□□□□ 0.6
CLN3-246ENST00000636228 CYP21A2P08686 494 aa18.77■□□□□ 0.6
CLN3-246ENST00000636228 MRPS5P82675 430 aaKnown RBP18.77■□□□□ 0.6
CLN3-246ENST00000636228 LAMC2Q13753 1193 aa18.77■□□□□ 0.6
CLN3-246ENST00000636228 MFSD10Q14728 455 aa18.77■□□□□ 0.6
CLN3-246ENST00000636228 TCTN1Q2MV58 587 aa18.77■□□□□ 0.6
CLN3-246ENST00000636228 SESTD1Q86VW0 696 aa18.77■□□□□ 0.6
CLN3-246ENST00000636228 CCDC155Q8N6L0 562 aa18.77■□□□□ 0.6
CLN3-246ENST00000636228 C7orf31Q8N865 590 aa18.77■□□□□ 0.6
CLN3-246ENST00000636228 PIBF1Q8WXW3 757 aa18.77■□□□□ 0.6
CLN3-246ENST00000636228 ARNTL2Q8WYA1 636 aa18.77■□□□□ 0.6
CLN3-246ENST00000636228 GPKOWQ92917 476 aaPredicted RBP eCLIP18.77■□□□□ 0.6
CLN3-246ENST00000636228 GTF2IRD1Q9UHL9 959 aa18.77■□□□□ 0.6
CLN3-246ENST00000636228 SCN10AQ9Y5Y9 1956 aa18.77■□□□□ 0.59
CLN3-246ENST00000636228 TNFRSF10AO00220 468 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 SELPP16109 830 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 CHMLP26374 656 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 IRX6P78412 446 aaPredicted RBP18.76■□□□□ 0.59
CLN3-246ENST00000636228 SP2Q02086 613 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 TAP1Q03518 808 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 TRDNQ13061 729 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 HIC1Q14526 733 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 PGM5Q15124 567 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 KIAA0753Q2KHM9 967 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 STOX1Q6ZVD7 989 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 LRRC8DQ7L1W4 858 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 FCHSD1Q86WN1 690 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 PPTC7Q8NI37 304 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 CAGE1Q8TC20 777 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 PHOSPHO2Q8TCD6 241 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 AFAP1L1Q8TED9 768 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 WNT8BQ93098 351 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 EMID1Q96A84 441 aaPredicted RBP18.76■□□□□ 0.59
CLN3-246ENST00000636228 BCAS3Q9H6U6 928 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 SCN5AQ14524 2016 aa18.76■□□□□ 0.59
CLN3-246ENST00000636228 LAMA4Q16363 1823 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 CYTH3O43739 400 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 NBNO60934 754 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 GGPS1O95749 300 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 CKBP12277 381 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 GHRHRQ02643 423 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 TFF2Q03403 129 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 GRM4Q14833 912 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 SKIV2LQ15477 1246 aaKnown RBP18.75■□□□□ 0.59
CLN3-246ENST00000636228 HSDL1Q3SXM5 330 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 MYSM1Q5VVJ2 828 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 VSIG10LQ86VR7 867 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 ADAMTS19Q8TE59 1207 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 MTCH2Q9Y6C9 303 aa18.75■□□□□ 0.59
CLN3-246ENST00000636228 CHD7Q9P2D1 2997 aa18.74■□□□□ 0.59
CLN3-246ENST00000636228 GBF1Q92538 1859 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms