RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 SNX25Q9H3E2 840 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 RPAP3Q9H6T3 665 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 ZNF215Q9UL58 517 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 POTEIP0CG38 1075 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 GPTP24298 496 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 CASP14P31944 242 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 NPY2RP49146 381 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 KCNA1Q09470 495 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 CUL4AQ13619 759 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 E2F5Q15329 346 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 AOC3Q16853 763 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 MCUQ8NE86 351 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 OSCP1Q8WVF1 389 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 MBD2Q9UBB5 411 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 ARID1BQ8NFD5 2236 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 C11orf95C9JLR9 678 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 ACTN1P12814 892 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 JAK1P23458 1154 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 S100A5P33763 92 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 IFRD2Q12894 506 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 TP53BP2Q13625 1128 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 TBC1D32Q96NH3 1257 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 HINFPQ9BQA5 517 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 LLPHQ9BRT6 129 aaKnown RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 CARD6Q9BX69 1037 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 AP5M1Q9H0R1 490 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 ABI2Q9NYB9 513 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 MYO7AQ13402 2215 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 HSPD1P10809 573 aaKnown RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 TMPOP42166 694 aaKnown RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 LIG4P49917 911 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 MORF4L2Q15014 288 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 KIF19Q2TAC6 998 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 XPO6Q96QU8 1125 aaKnown RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 ZRANB1Q9UGI0 708 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 BAIAP2L1Q9UHR4 511 aa6.49□□□□□ -1.37
SCN1A-212ENST00000636194 ZBTB12Q9Y330 459 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-212ENST00000636194 MED7O43513 233 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ITGAXP20702 1163 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ARL3P36405 182 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 STAT1P42224 750 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 KRT72Q14CN4 511 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ATAD3BQ5T9A4 648 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 CENPPQ6IPU0 288 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 TTBK2Q6IQ55 1244 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 SCYL2Q6P3W7 929 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 TRIM67Q6ZTA4 783 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 TRIM69Q86WT6 500 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 MGARPQ8TDB4 240 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 INTS4Q96HW7 963 aaKnown RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 MAP10Q9P2G4 905 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 SEL1LQ9UBV2 794 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 IL16Q14005 1332 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 AATKQ6ZMQ8 1374 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 HFM1A2PYH4 1435 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ATF2P15336 505 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 CTNNA1P35221 906 aaKnown RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 CCDC15Q0P6D6 951 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 KIAA1755Q5JYT7 1200 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 FAM178BQ8IXR5 827 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 COPRSQ9NQ92 184 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 PCDHGB4Q9UN71 923 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 WDR7Q9Y4E6 1490 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 SMCO3A2RU48 225 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 TOM1O60784 492 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ALDH1L1O75891 902 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 SLC1A4P43007 532 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 NIM1KQ8IY84 436 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ATP11CQ8NB49 1132 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ZBED2Q9BTP6 218 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 SYNDIG1Q9H7V2 258 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ZC3H7BQ9UGR2 993 aaKnown RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 EIF4G3O43432 1585 aaKnown RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 MMEP08473 750 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 NUGGCQ68CJ6 796 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 DISC1Q9NRI5 854 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ABCF3Q9NUQ8 709 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 HACD3Q9P035 362 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 CTNND2Q9UQB3 1225 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 TRPA1O75762 1119 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ANP32DO95626 131 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 RALBP11234 206 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 PAPOLAP51003 745 aaKnown RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 HAND2P61296 217 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 MXD4Q14582 209 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 CCDC142Q17RM4 750 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 STX12Q86Y82 276 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 AOPEPQ8N6M6 819 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 ANKRD36BP1Q96IX9 119 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 PPP1R13BQ96KQ4 1090 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 PIGUQ9H490 435 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 MLXIPQ9HAP2 919 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 RNF14Q9UBS8 474 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 DPYSL4O14531 572 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 KRT75O95678 551 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 SNRPA1P09661 255 aaKnown RBP6.48□□□□□ -1.37
SCN1A-212ENST00000636194 PIK3CAP42336 1068 aa6.48□□□□□ -1.37
SCN1A-212ENST00000636194 TRAPPC10P48553 1259 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms