RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 JMJD4Q9H9V9 463 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 MED4Q9NPJ6 270 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 POTEMA6NI47 508 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 LRRIQ3A6PVS8 624 aaPredicted RBP14.18□□□□□ -0.14
LINC00540-203ENST00000631321 USO1O60763 962 aaKnown RBP14.18□□□□□ -0.14
LINC00540-203ENST00000631321 TTLL1O95922 423 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 SERPINB2P05120 415 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 PRLRP16471 622 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 ITIH3Q06033 890 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 ZCWPW2Q504Y3 356 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 HYIQ5T013 277 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 KCNK18Q7Z418 384 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 BAP1Q92560 729 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 DDX12PQ92771 950 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 MTMR8Q96EF0 704 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 SH2D4AQ9H788 454 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 SWAP70Q9UH65 585 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 JRKLQ9Y4A0 524 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 PCDHA13Q9Y5I0 950 aa14.18□□□□□ -0.14
LINC00540-203ENST00000631321 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.17□□□□□ -0.14
LINC00540-203ENST00000631321 KLRG2A4D1S0 409 aaPredicted RBP14.17□□□□□ -0.14
LINC00540-203ENST00000631321 PDE2AO00408 941 aaPredicted RBP14.17□□□□□ -0.14
LINC00540-203ENST00000631321 TOM1O60784 492 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 PPP1R11O60927 126 aaPredicted RBP14.17□□□□□ -0.14
LINC00540-203ENST00000631321 N4BP1O75113 896 aaKnown RBP14.17□□□□□ -0.14
LINC00540-203ENST00000631321 PLEKP08567 350 aaPredicted RBP14.17□□□□□ -0.14
LINC00540-203ENST00000631321 GYS2P54840 703 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 FAM182BQ5T319 152 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 DPP8Q6V1X1 898 aaPredicted RBP14.17□□□□□ -0.14
LINC00540-203ENST00000631321 DYMQ7RTS9 669 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 HAS1Q92839 578 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 DNAJC19Q96DA6 116 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 LRRC4BQ9NT99 713 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 SNX12Q9UMY4 172 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 SLC26A4O43511 780 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 IDEP14735 1019 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 GCFC2P16383 781 aaKnown RBP14.17□□□□□ -0.14
LINC00540-203ENST00000631321 KIF11P52732 1056 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 IQCEQ6IPM2 695 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 KRT26Q7Z3Y9 468 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 TMC4Q7Z404 712 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 C2CD5Q86YS7 1000 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 ADGRF4Q8IZF3 695 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 TSG101Q99816 390 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 IFIH1Q9BYX4 1025 aaKnown RBP14.17□□□□□ -0.14
LINC00540-203ENST00000631321 VPS18Q9P253 973 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 LTBP1Q14766 1721 aa14.17□□□□□ -0.14
LINC00540-203ENST00000631321 MACROD2A1Z1Q3 448 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 PJA2O43164 708 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 TACC1O75410 805 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 EIF4A3P38919 411 aaKnown RBP14.16□□□□□ -0.14
LINC00540-203ENST00000631321 TNNI2P48788 182 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 ECM1Q16610 540 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 CCDC96Q2M329 555 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 ASTE1Q2TB18 679 aaPredicted RBP14.16□□□□□ -0.14
LINC00540-203ENST00000631321 RUBCNQ92622 972 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 CAPZA3Q96KX2 299 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 GPCPD1Q9NPB8 672 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 DDX4Q9NQI0 724 aaKnown RBP14.16□□□□□ -0.14
LINC00540-203ENST00000631321 FAM207AQ9NSI2 230 aaPredicted RBP14.16□□□□□ -0.14
LINC00540-203ENST00000631321 DDX25Q9UHL0 483 aaKnown RBP14.16□□□□□ -0.14
LINC00540-203ENST00000631321 MAPK8IP2Q13387 824 aaPredicted RBP14.16□□□□□ -0.14
LINC00540-203ENST00000631321 GPATCH4Q5T3I0 446 aaKnown RBP14.16□□□□□ -0.14
LINC00540-203ENST00000631321 PDXDC1Q6P996 788 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 CREG2Q8IUH2 290 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 MYOCDQ8IZQ8 938 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 MMGT1Q8N4V1 131 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 CUL5Q93034 780 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 NAP1L4Q99733 375 aaKnown RBP14.16□□□□□ -0.14
LINC00540-203ENST00000631321 COA1Q9GZY4 146 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 MMRN2Q9H8L6 949 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 ATF5Q9Y2D1 282 aaPredicted RBP14.16□□□□□ -0.14
LINC00540-203ENST00000631321 FAN1Q9Y2M0 1017 aa14.16□□□□□ -0.14
LINC00540-203ENST00000631321 SSU72P8A0A1W2PR75 194 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 LRRC53A6NM62 1247 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 ZNF185O15231 689 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 SHMT1P34896 483 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 MRPL12P52815 198 aaKnown RBP14.15□□□□□ -0.14
LINC00540-203ENST00000631321 GTF2IP78347 998 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 COASYQ13057 564 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 UBE2SQ16763 222 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 HSP90B2PQ58FF3 399 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 SERPINB13Q9UIV8 391 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 USP21Q9UK80 565 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 LRRC37AA6NMS7 1700 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 ZC3H4Q9UPT8 1303 aaKnown RBP14.15□□□□□ -0.14
LINC00540-203ENST00000631321 ZBTB5O15062 677 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 LMAN1P49257 510 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 FKBP3Q00688 224 aaKnown RBP14.15□□□□□ -0.14
LINC00540-203ENST00000631321 PICALMQ13492 652 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 CCNI2Q6ZMN8 369 aaPredicted RBP14.15□□□□□ -0.14
LINC00540-203ENST00000631321 RRAGAQ7L523 313 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 GOLGA5Q8TBA6 731 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 CAGE1Q8TC20 777 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 SYN2Q92777 582 aaPredicted RBP14.15□□□□□ -0.14
LINC00540-203ENST00000631321 CEP63Q96MT8 703 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 JADE2Q9NQC1 790 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 CAPN6Q9Y6Q1 641 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 KDM3AQ9Y4C1 1321 aa14.15□□□□□ -0.14
LINC00540-203ENST00000631321 C6orf229H3BNL8 230 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms