RNA–Protein interactions for RNA: ENST00000629427.2

SHPRH-211, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SHPRH, Length 7,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-211ENST00000629427 ERFEQ4G0M1 354 aa12.77□□□□□ -0.36
SHPRH-211ENST00000629427 NACC1Q96RE7 527 aa12.77□□□□□ -0.36
SHPRH-211ENST00000629427 PPFIA4O75335 1185 aa12.77□□□□□ -0.36
SHPRH-211ENST00000629427 SRGAP2CP0DJJ0 459 aa12.77□□□□□ -0.36
SHPRH-211ENST00000629427 INPP1P49441 399 aa12.77□□□□□ -0.36
SHPRH-211ENST00000629427 FAM182BQ5T319 152 aa12.77□□□□□ -0.36
SHPRH-211ENST00000629427 USP44Q9H0E7 712 aa12.77□□□□□ -0.36
SHPRH-211ENST00000629427 FANCLQ9NW38 375 aa12.77□□□□□ -0.36
SHPRH-211ENST00000629427 NXF1Q9UBU9 619 aaKnown RBP12.77□□□□□ -0.36
SHPRH-211ENST00000629427 CLIC2O15247 247 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 ACTN1P12814 892 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 ELF1P32519 619 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 KCTD6Q8NC69 237 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 LRRC8CQ8TDW0 803 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 ACCSQ96QU6 501 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 LRRC4Q9HBW1 653 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 PCDHA4Q9UN74 947 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 MEIS1O00470 390 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 NR2F2P24468 414 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 DYNLL1P63167 89 aaKnown RBP12.77□□□□□ -0.37
SHPRH-211ENST00000629427 HP1BP3Q5SSJ5 553 aaPredicted RBP12.77□□□□□ -0.37
SHPRH-211ENST00000629427 EAF2Q96CJ1 260 aaPredicted RBP12.77□□□□□ -0.37
SHPRH-211ENST00000629427 SLC8A2Q9UPR5 921 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 ATF5Q9Y2D1 282 aaPredicted RBP12.77□□□□□ -0.37
SHPRH-211ENST00000629427 PFKFB2O60825 505 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 H2AFZP0C0S5 128 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 ANXA13P27216 316 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 MTERF2Q49AM1 385 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 ZNF772Q68DY9 489 aaPredicted RBP12.77□□□□□ -0.37
SHPRH-211ENST00000629427 TRIM68Q6AZZ1 485 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 H2AFVQ71UI9 128 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 IL17REQ8NFR9 667 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 MED7O43513 233 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 RBM6P78332 1123 aaKnown RBP12.77□□□□□ -0.37
SHPRH-211ENST00000629427 LMNB2Q03252 620 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 SCRN1Q12765 414 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 WHAMMP3Q1A5X7 153 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 RASGRP4Q8TDF6 673 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 RNF139Q8WU17 664 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 LMBRD1Q9NUN5 540 aa12.77□□□□□ -0.37
SHPRH-211ENST00000629427 ATP8B3O60423 1300 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 KCNQ4P56696 695 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 SESN3P58005 492 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 BBOF1Q8ND07 529 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 MAGOHBQ96A72 148 aaKnown RBP12.76□□□□□ -0.37
SHPRH-211ENST00000629427 RIPOR2Q9Y4F9 1068 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 GOLGA8SH3BPF8 625 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 M0R2C6 588 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 ZNF445P59923 1031 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 EHHADHQ08426 723 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 IFT122Q9HBG6 1241 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 MYOM2P54296 1465 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 EIF3CLB5ME19 914 aaKnown RBP12.76□□□□□ -0.37
SHPRH-211ENST00000629427 NVLO15381 856 aaKnown RBP12.76□□□□□ -0.37
SHPRH-211ENST00000629427 SMIM24O75264 130 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 DYNLT1P63172 113 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 LARP4BQ92615 738 aaKnown RBP12.76□□□□□ -0.37
SHPRH-211ENST00000629427 EIF3CQ99613 913 aaKnown RBP12.76□□□□□ -0.37
SHPRH-211ENST00000629427 ZSWIM6Q9HCJ5 1215 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 MCF2LO15068 1137 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 CMA1P23946 247 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 IREB2P48200 963 aaKnown RBP12.76□□□□□ -0.37
SHPRH-211ENST00000629427 MYO1EQ12965 1108 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 SPATA1Q5VX52 437 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 SLC10A4Q96EP9 437 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 FIS1Q9Y3D6 152 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 YEATS2Q9ULM3 1422 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 BMP3P12645 472 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 TRIML1Q8N9V2 468 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 NLRP4Q96MN2 994 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 POLIQ9UNA4 740 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 LAD1O00515 517 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 GPC4O75487 556 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 CPP00450 1065 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 EEF1GP26641 437 aaKnown RBP12.76□□□□□ -0.37
SHPRH-211ENST00000629427 CDR2Q01850 454 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 RNF217Q8TC41 542 aa12.76□□□□□ -0.37
SHPRH-211ENST00000629427 GOLGA8KD6RF30 607 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 BNIP3LO60238 219 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 PPFIA2O75334 1257 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 TTC4O95801 387 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 GAP43P17677 238 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 CC2D2BQ6DHV5 1058 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 TUBGCP2Q9BSJ2 902 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 ZBED2Q9BTP6 218 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 SYDE2Q5VT97 1194 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 RUNDC3BQ96NL0 473 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 BLMP54132 1417 aaPredicted RBP12.75□□□□□ -0.37
SHPRH-211ENST00000629427 MX2P20592 715 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 ASPHQ12797 758 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 C1orf228Q6PIY5 440 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 CDHR1Q96JP9 859 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 PUS3Q9BZE2 481 aaKnown RBP12.75□□□□□ -0.37
SHPRH-211ENST00000629427 MRPL46Q9H2W6 279 aaKnown RBP12.75□□□□□ -0.37
SHPRH-211ENST00000629427 PPP2R2CQ9Y2T4 447 aa12.75□□□□□ -0.37
SHPRH-211ENST00000629427 EPN1Q9Y6I3 576 aaPredicted RBP12.75□□□□□ -0.37
SHPRH-211ENST00000629427 PDIA3P30101 505 aaKnown RBP12.75□□□□□ -0.37
SHPRH-211ENST00000629427 THOC5Q13769 683 aaKnown RBP12.75□□□□□ -0.37
SHPRH-211ENST00000629427 DALRD3Q5D0E6 543 aaKnown RBP12.75□□□□□ -0.37
SHPRH-211ENST00000629427 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms