RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	SRPRB	Q9Y5M8	271 aa	Known RBP	10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CCDC194	A0A1B0GVG4	234 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	PLA2G6	O60733	806 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CUTA	O60888	179 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	LETM1	O95202	739 aa	Predicted RBP	10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	BMP15	O95972	392 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CYP2B6	P20813	491 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	HERVK_113	P62684	666 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	PTGDR	Q13258	359 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	MTMR2	Q13614	643 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	SPECC1	Q5M775	1068 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	MAP3K21	Q5TCX8	1036 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP49	Q70CQ1	688 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	REXO1	Q8N1G1	1221 aa	Known RBP	10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	KRI1	Q8N9T8	703 aa	Known RBP	10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	FEZ1	Q99689	392 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	NUP62CL	Q9H1M0	184 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	EMILIN3	Q9NT22	766 aa		10.81	□□□□□ -0.68
PDLIM5-223	ENST00000627587	BRCA2	P51587	3418 aa		10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	GOLGA6L3	A6NEY3	463 aa		10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	MCM7	P33993	719 aa		10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	RGS2	P41220	211 aa		10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	ADCY7	P51828	1080 aa		10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CCNA1	P78396	465 aa		10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	UBE2S	Q16763	222 aa		10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	JAKMIP3	Q5VZ66	844 aa		10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	C7orf61	Q8IZ16	206 aa		10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	RBSN	Q9H1K0	784 aa		10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	RANBP17	Q9H2T7	1088 aa	Known RBP	10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	PCDHA1	Q9Y5I3	950 aa		10.8	□□□□□ -0.68
PDLIM5-223	ENST00000627587	MEIS2	O14770	477 aa		10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587	LRIT3	Q3SXY7	679 aa		10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587	KRT25	Q7Z3Z0	450 aa		10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587	PLEKHH3	Q7Z736	793 aa		10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587	ZNF579	Q8NAF0	562 aa	Known RBP	10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587	TBCK	Q8TEA7	893 aa		10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587	DIS3L	Q8TF46	1054 aa	Known RBP	10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587	TRIB2	Q92519	343 aa		10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP6NL	Q92738	828 aa		10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CSRNP2	Q9H175	543 aa		10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587	TMEM60	Q9H2L4	133 aa		10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587	RBPJL	Q9UBG7	517 aa		10.79	□□□□□ -0.68
PDLIM5-223	ENST00000627587		A0A087X0B3	334 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP17L15	C9J2P7	530 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP17L13	C9JLJ4	530 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP17L11	C9JVI0	530 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP17L18	D6R9N7	530 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP17L22	D6RA61	530 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP17L17	D6RBQ6	530 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP17L19	D6RCP7	530 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP17L20	D6RJB6	530 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	ZNF202	O95125	648 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	XRCC6	P12956	609 aa	Known RBP eCLIP	10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP14	P54578	494 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	ERVK-9	P63128	1117 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	ERVK-24	P63145	666 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP17L24	Q0WX57	530 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	NONO	Q15233	471 aa	Known RBP eCLIP	10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USP17L6P	Q6QN14	398 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	FBXO11	Q86XK2	927 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CKAP2L	Q8IYA6	745 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CHURC1	Q8WUH1	139 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	LPAR1	Q92633	364 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	C12orf42	Q96LP6	360 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	AMN	Q9BXJ7	453 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	TNMD	Q9H2S6	317 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	PSTPIP2	Q9H939	334 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	GRPEL1	Q9HAV7	217 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	RABGAP1	Q9Y3P9	1069 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	ZNF536	O15090	1300 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	DLL1	O00548	723 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	WDR46	O15213	610 aa	Known RBP	10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	KIN	O60870	393 aa	Known RBP	10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	VCAM1	P19320	739 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	MNX1	P50219	401 aa	Predicted RBP	10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	TRIM32	Q13049	653 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	USH1G	Q495M9	461 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	MORN1	Q5T089	497 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	FAM160B2	Q86V87	743 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CRYGN	Q8WXF5	182 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	ERCC4	Q92889	916 aa	Predicted RBP	10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	CUL5	Q93034	780 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	KIFC2	Q96AC6	838 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	GLT8D2	Q9H1C3	349 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	FEM1B	Q9UK73	627 aa		10.78	□□□□□ -0.68
PDLIM5-223	ENST00000627587	SOX1	O00570	391 aa	Predicted RBP	10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	MRPL12	P52815	198 aa	Known RBP	10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	CACNB2	Q08289	660 aa	Predicted RBP	10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	TRAF1	Q13077	416 aa		10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	MFSD14C	Q5VZR4	134 aa		10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	GPR142	Q7Z601	462 aa		10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	NEK8	Q86SG6	692 aa		10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	TDH	Q8IZJ6	230 aa		10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	FERMT2	Q96AC1	680 aa		10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	LRCH3	Q96II8	777 aa		10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	EPSTI1	Q96J88	318 aa		10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	PANK2	Q9BZ23	570 aa		10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587		A0A0G2JMZ2	1700 aa		10.77	□□□□□ -0.69
PDLIM5-223	ENST00000627587	PLXNB2	O15031	1838 aa		10.77	□□□□□ -0.69

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