RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 KIAA1217Q5T5P2 1943 aa17.23■□□□□ 0.35
PNKP-218ENST00000625299 MUC6Q6W4X9 2439 aa17.22■□□□□ 0.35
PNKP-218ENST00000625299 ABHD14A-ACY1A0A1B0GW23 586 aa17.22■□□□□ 0.35
PNKP-218ENST00000625299 FGRP09769 529 aa17.22■□□□□ 0.35
PNKP-218ENST00000625299 ERVK-21P61565 698 aa17.22■□□□□ 0.35
PNKP-218ENST00000625299 GJD3Q8N144 294 aa17.22■□□□□ 0.35
PNKP-218ENST00000625299 UIMC1Q96RL1 719 aa17.22■□□□□ 0.35
PNKP-218ENST00000625299 UBA5Q9GZZ9 404 aa17.22■□□□□ 0.35
PNKP-218ENST00000625299 TCP11L1Q9NUJ3 509 aa17.22■□□□□ 0.35
PNKP-218ENST00000625299 HDAC6Q9UBN7 1215 aa17.22■□□□□ 0.35
PNKP-218ENST00000625299 GTF2IRD1Q9UHL9 959 aa17.22■□□□□ 0.35
PNKP-218ENST00000625299 PARNO95453 639 aaKnown RBP17.21■□□□□ 0.35
PNKP-218ENST00000625299 FGAP02671 866 aa17.21■□□□□ 0.35
PNKP-218ENST00000625299 CXCL10P02778 98 aa17.21■□□□□ 0.35
PNKP-218ENST00000625299 ZNF286BP0CG31 522 aa17.21■□□□□ 0.35
PNKP-218ENST00000625299 IL9P15248 144 aa17.21■□□□□ 0.35
PNKP-218ENST00000625299 PSEN2P49810 448 aa17.21■□□□□ 0.35
PNKP-218ENST00000625299 IKBKEQ14164 716 aa17.21■□□□□ 0.35
PNKP-218ENST00000625299 DGKDQ16760 1214 aa17.21■□□□□ 0.35
PNKP-218ENST00000625299 TBC1D5Q92609 795 aa17.21■□□□□ 0.35
PNKP-218ENST00000625299 TAAR1Q96RJ0 339 aa17.21■□□□□ 0.35
PNKP-218ENST00000625299 MYH6P13533 1939 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 EFCAB14O75071 495 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 MFSD10Q14728 455 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 ALX1Q15699 326 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 CDC37Q16543 378 aaPredicted RBP17.2■□□□□ 0.34
PNKP-218ENST00000625299 LEXMQ3ZCV2 418 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 ALYREFQ86V81 257 aaKnown RBP17.2■□□□□ 0.34
PNKP-218ENST00000625299 FBXO22Q8NEZ5 403 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 SYTL5Q8TDW5 730 aaPredicted RBP17.2■□□□□ 0.34
PNKP-218ENST00000625299 NSUN6Q8TEA1 469 aaKnown RBP17.2■□□□□ 0.34
PNKP-218ENST00000625299 FAM227BQ96M60 508 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 ZKSCAN3Q9BRR0 538 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 C17orf80Q9BSJ5 609 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 KATNAL1Q9BW62 490 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 HELLSQ9NRZ9 838 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 COL20A1Q9P218 1284 aa17.2■□□□□ 0.34
PNKP-218ENST00000625299 MYH7BA7E2Y1 1941 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.19■□□□□ 0.34
PNKP-218ENST00000625299 A0A0D9SFI3 127 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 SORBS3O60504 671 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 SNHG28P0DPA3 235 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 EIF2AK2P19525 551 aaKnown RBP17.19■□□□□ 0.34
PNKP-218ENST00000625299 ZNF200P98182 395 aaPredicted RBP17.19■□□□□ 0.34
PNKP-218ENST00000625299 RBL2Q08999 1139 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 PTK7Q13308 1070 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 STXBP2Q15833 593 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 KIAA0753Q2KHM9 967 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 ZNF618Q5T7W0 954 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 PTCRAQ6ISU1 281 aaPredicted RBP17.19■□□□□ 0.34
PNKP-218ENST00000625299 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.19■□□□□ 0.34
PNKP-218ENST00000625299 MFSD6Q6ZSS7 791 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 FAM178BQ8IXR5 827 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 MYOCDQ8IZQ8 938 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 RGS22Q8NE09 1264 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.19■□□□□ 0.34
PNKP-218ENST00000625299 WNT8BQ93098 351 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 EVI5LQ96CN4 794 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 RMDN3Q96TC7 470 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 ZBTB47Q9UFB7 747 aaPredicted RBP17.19■□□□□ 0.34
PNKP-218ENST00000625299 MRVI1Q9Y6F6 885 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 ABCB11O95342 1321 aa17.19■□□□□ 0.34
PNKP-218ENST00000625299 DHX16O60231 1041 aaKnown RBP17.18■□□□□ 0.34
PNKP-218ENST00000625299 CSPP1Q1MSJ5 1256 aa17.18■□□□□ 0.34
PNKP-218ENST00000625299 GPATCH4Q5T3I0 446 aaKnown RBP17.18■□□□□ 0.34
PNKP-218ENST00000625299 ARHGEF16Q5VV41 709 aa17.18■□□□□ 0.34
PNKP-218ENST00000625299 EP400NLQ6ZTU2 488 aa17.18■□□□□ 0.34
PNKP-218ENST00000625299 DHX37Q8IY37 1157 aaKnown RBP17.18■□□□□ 0.34
PNKP-218ENST00000625299 TTC14Q96N46 770 aa17.18■□□□□ 0.34
PNKP-218ENST00000625299 DDX41Q9UJV9 622 aaKnown RBP17.18■□□□□ 0.34
PNKP-218ENST00000625299 PCDHB15Q9Y5E8 787 aa17.18■□□□□ 0.34
PNKP-218ENST00000625299 MICAL3Q7RTP6 2002 aa17.18■□□□□ 0.34
PNKP-218ENST00000625299 PRR33A8MZF0 331 aa17.17■□□□□ 0.34
PNKP-218ENST00000625299 H3BQ06 376 aaPredicted RBP17.17■□□□□ 0.34
PNKP-218ENST00000625299 LGR5O75473 907 aa17.17■□□□□ 0.34
PNKP-218ENST00000625299 AMHP03971 560 aa17.17■□□□□ 0.34
PNKP-218ENST00000625299 HSPD1P10809 573 aaKnown RBP17.17■□□□□ 0.34
PNKP-218ENST00000625299 MBTPS1Q14703 1052 aa17.17■□□□□ 0.34
PNKP-218ENST00000625299 TRIM71Q2Q1W2 868 aaKnown RBP17.17■□□□□ 0.34
PNKP-218ENST00000625299 MCMDC2Q4G0Z9 681 aa17.17■□□□□ 0.34
PNKP-218ENST00000625299 TRAF7Q6Q0C0 670 aa17.17■□□□□ 0.34
PNKP-218ENST00000625299 MCF2L2Q86YR7 1114 aa17.17■□□□□ 0.34
PNKP-218ENST00000625299 TBC1D10CQ8IV04 446 aa17.17■□□□□ 0.34
PNKP-218ENST00000625299 INSL6Q9Y581 213 aa17.17■□□□□ 0.34
PNKP-218ENST00000625299 PIEZO1Q92508 2521 aa17.17■□□□□ 0.34
PNKP-218ENST00000625299 F2P00734 622 aa17.16■□□□□ 0.34
PNKP-218ENST00000625299 THPOP40225 353 aa17.16■□□□□ 0.34
PNKP-218ENST00000625299 LAMC2Q13753 1193 aa17.16■□□□□ 0.34
PNKP-218ENST00000625299 ZNF589Q86UQ0 364 aaPredicted RBP17.16■□□□□ 0.34
PNKP-218ENST00000625299 PPTC7Q8NI37 304 aa17.16■□□□□ 0.34
PNKP-218ENST00000625299 IWS1Q96ST2 819 aa17.16■□□□□ 0.34
PNKP-218ENST00000625299 NEDD4P46934 1319 aa17.16■□□□□ 0.34
PNKP-218ENST00000625299 ALADP13716 330 aa17.15■□□□□ 0.34
PNKP-218ENST00000625299 NMIQ13287 307 aaPredicted RBP17.15■□□□□ 0.34
PNKP-218ENST00000625299 PTPROQ16827 1216 aa17.15■□□□□ 0.34
PNKP-218ENST00000625299 QRICH1Q2TAL8 776 aa17.15■□□□□ 0.34
PNKP-218ENST00000625299 ANKRD45Q5TZF3 282 aa17.15■□□□□ 0.34
PNKP-218ENST00000625299 DIEXFQ68CQ4 756 aaKnown RBP17.15■□□□□ 0.34
PNKP-218ENST00000625299 ADGRF4Q8IZF3 695 aa17.15■□□□□ 0.34
PNKP-218ENST00000625299 PNMA1Q8ND90 353 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms