RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-219ENST00000620786 CUEDC2Q9H467 287 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 ANAPC5Q9UJX4 755 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 PCDHA7Q9UN72 937 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 MBD5Q9P267 1494 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 SRGAP2CP0DJJ0 459 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 PPARDQ03181 441 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 MAP7Q14244 749 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 FAM149B1Q96BN6 582 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 ERO1AQ96HE7 468 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 TRIM56Q9BRZ2 755 aaKnown RBP12.42□□□□□ -0.42
CLIP1-219ENST00000620786 PNMA6FA0A0J9YX94 578 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 BFSP1Q12934 665 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 RC3H1Q5TC82 1133 aaKnown RBP12.42□□□□□ -0.42
CLIP1-219ENST00000620786 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLIP1-219ENST00000620786 AK8Q96MA6 479 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 SLC38A10Q9HBR0 1119 aa12.42□□□□□ -0.42
CLIP1-219ENST00000620786 KRIT1O00522 736 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 SAT1P21673 171 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 RUFY4Q6ZNE9 571 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 TTLL11Q8NHH1 800 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 GJD4Q96KN9 370 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-219ENST00000620786 CNOT6LQ96LI5 555 aaKnown RBP12.41□□□□□ -0.42
CLIP1-219ENST00000620786 TMEM206Q9H813 350 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 PSDA5PKW4 1024 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-219ENST00000620786 COBLO75128 1261 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 NR2F2P24468 414 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 TTBK2Q6IQ55 1244 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 MAP7D3Q8IWC1 876 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 MAP4K1Q92918 833 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 TDRD3Q9H7E2 651 aaKnown RBP12.41□□□□□ -0.42
CLIP1-219ENST00000620786 NDUFA8P51970 172 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 FAM83BQ5T0W9 1011 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 CCDC62Q6P9F0 684 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 C7orf31Q8N865 590 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 PARD3BQ8TEW8 1205 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 DCAF4Q8WV16 495 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 STK25O00506 426 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 HOXD10P28358 340 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 SATB1Q01826 763 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 PSMD6Q15008 389 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 LRRC41Q15345 812 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 DSTYKQ6XUX3 929 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 RPUSD2Q8IZ73 545 aaKnown RBP12.41□□□□□ -0.42
CLIP1-219ENST00000620786 TRIM58Q8NG06 486 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 NLRP4Q96MN2 994 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 ABCC12Q96J65 1359 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 ZNF233A6NK53 670 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 HGSO14964 777 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-219ENST00000620786 CLIC2O15247 247 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 S100BP04271 92 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-219ENST00000620786 ADRA2BP18089 450 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 VPS41P49754 854 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 NEDD9Q14511 834 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 FAM186BQ8IYM0 893 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 HOXC10Q9NYD6 342 aa12.41□□□□□ -0.42
CLIP1-219ENST00000620786 SH2B2O14492 632 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-219ENST00000620786 PTPN12Q05209 780 aaKnown RBP12.4□□□□□ -0.42
CLIP1-219ENST00000620786 RPS6KA2Q15349 733 aa12.4□□□□□ -0.42
CLIP1-219ENST00000620786 ARHGEF1Q92888 912 aaKnown RBP12.4□□□□□ -0.42
CLIP1-219ENST00000620786 RPF1Q9H9Y2 349 aaKnown RBP12.4□□□□□ -0.42
CLIP1-219ENST00000620786 NXF1Q9UBU9 619 aaKnown RBP12.4□□□□□ -0.42
CLIP1-219ENST00000620786 CPSF3Q9UKF6 684 aaKnown RBP12.4□□□□□ -0.42
CLIP1-219ENST00000620786 TNS3Q68CZ2 1445 aa12.4□□□□□ -0.42
CLIP1-219ENST00000620786 BRD1O95696 1058 aa12.4□□□□□ -0.42
CLIP1-219ENST00000620786 GNAT1P11488 350 aa12.4□□□□□ -0.42
CLIP1-219ENST00000620786 CAPN12Q6ZSI9 719 aa12.4□□□□□ -0.42
CLIP1-219ENST00000620786 PPFIBP2Q8ND30 876 aa12.4□□□□□ -0.42
CLIP1-219ENST00000620786 STAP2Q9UGK3 403 aa12.4□□□□□ -0.42
CLIP1-219ENST00000620786 CDK12Q9NYV4 1490 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-219ENST00000620786 USP17L5A8MUK1 530 aa12.4□□□□□ -0.42
CLIP1-219ENST00000620786 MED7O43513 233 aa12.4□□□□□ -0.42
CLIP1-219ENST00000620786 AFPP02771 609 aaKnown RBP12.4□□□□□ -0.42
CLIP1-219ENST00000620786 SRGAP2BP0DMP2 458 aa12.4□□□□□ -0.42
CLIP1-219ENST00000620786 ADAT2Q7Z6V5 191 aaKnown RBP12.4□□□□□ -0.42
CLIP1-219ENST00000620786 RAVER2Q9HCJ3 691 aaKnown RBP12.4□□□□□ -0.42
CLIP1-219ENST00000620786 CYP21A2P08686 494 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 OSBP2Q969R2 916 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 MTMR6Q9Y217 621 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 SLC4A1P02730 911 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 SPATA1Q5VX52 437 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 MGARPQ8TDB4 240 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 RILPQ96NA2 401 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 FEM1BQ9UK73 627 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 POLIQ9UNA4 740 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 RGS12O14924 1447 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 CTTNQ14247 550 aaKnown RBP12.39□□□□□ -0.43
CLIP1-219ENST00000620786 ADCK5Q3MIX3 580 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 SIX6OS1Q8N1H7 587 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 PPP4R1Q8TF05 950 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 LRRC4Q9HBW1 653 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 ABCC3O15438 1527 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 ATXN8OSP0DMR3 200 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 LMNB1P20700 586 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 LMBRD1Q9NUN5 540 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 HYOU1Q9Y4L1 999 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 MAD1L1Q9Y6D9 718 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 CYP27B1O15528 508 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 GSTA1P08263 222 aa12.39□□□□□ -0.43
CLIP1-219ENST00000620786 GSTA2P09210 222 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms