RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.53■■□□□ 1.2
UPF3A-211ENST00000618700 BTBD18B2RXH4 712 aa22.52■■□□□ 1.2
UPF3A-211ENST00000618700 B4DLN1 442 aa22.52■■□□□ 1.2
UPF3A-211ENST00000618700 CYP2C19P33261 490 aa22.52■■□□□ 1.2
UPF3A-211ENST00000618700 UBXN2AP68543 259 aa22.52■■□□□ 1.2
UPF3A-211ENST00000618700 SAFBQ15424 915 aaKnown RBP eCLIP22.52■■□□□ 1.2
UPF3A-211ENST00000618700 MFSD14CQ5VZR4 134 aa22.52■■□□□ 1.2
UPF3A-211ENST00000618700 PCNX4Q63HM2 1172 aa22.52■■□□□ 1.2
UPF3A-211ENST00000618700 XRRA1Q6P2D8 792 aa22.52■■□□□ 1.2
UPF3A-211ENST00000618700 VSIG10LQ86VR7 867 aa22.52■■□□□ 1.2
UPF3A-211ENST00000618700 SPRYD3Q8NCJ5 442 aa22.52■■□□□ 1.2
UPF3A-211ENST00000618700 MPHOSPH6Q99547 160 aaKnown RBP22.52■■□□□ 1.2
UPF3A-211ENST00000618700 KATNBL1Q9H079 304 aa22.52■■□□□ 1.2
UPF3A-211ENST00000618700 H3BQV1 296 aa22.51■■□□□ 1.19
UPF3A-211ENST00000618700 SYT1P21579 422 aa22.51■■□□□ 1.19
UPF3A-211ENST00000618700 CCND2P30279 289 aa22.51■■□□□ 1.19
UPF3A-211ENST00000618700 PDE4DQ08499 809 aa22.51■■□□□ 1.19
UPF3A-211ENST00000618700 TRIM32Q13049 653 aa22.51■■□□□ 1.19
UPF3A-211ENST00000618700 MAP3K21Q5TCX8 1036 aa22.51■■□□□ 1.19
UPF3A-211ENST00000618700 FOXP1Q9H334 677 aaPredicted RBP22.51■■□□□ 1.19
UPF3A-211ENST00000618700 CENPFP49454 3210 aa22.5■■□□□ 1.19
UPF3A-211ENST00000618700 KIF28PB7ZC32 967 aa22.5■■□□□ 1.19
UPF3A-211ENST00000618700 INHAP05111 366 aa22.5■■□□□ 1.19
UPF3A-211ENST00000618700 U2AF2P26368 475 aaKnown RBP eCLIP22.5■■□□□ 1.19
UPF3A-211ENST00000618700 MRPS9P82933 396 aaKnown RBP22.5■■□□□ 1.19
UPF3A-211ENST00000618700 ARHGAP4P98171 946 aa22.5■■□□□ 1.19
UPF3A-211ENST00000618700 NONOQ15233 471 aaKnown RBP eCLIP22.5■■□□□ 1.19
UPF3A-211ENST00000618700 EARS2Q5JPH6 523 aaKnown RBP22.5■■□□□ 1.19
UPF3A-211ENST00000618700 SH3TC2Q8TF17 1288 aa22.5■■□□□ 1.19
UPF3A-211ENST00000618700 NRBP1Q9UHY1 535 aa22.5■■□□□ 1.19
UPF3A-211ENST00000618700 MYH7BA7E2Y1 1941 aa22.5■■□□□ 1.19
UPF3A-211ENST00000618700 CCDC194A0A1B0GVG4 234 aa22.49■■□□□ 1.19
UPF3A-211ENST00000618700 CYP3A4P08684 503 aa22.49■■□□□ 1.19
UPF3A-211ENST00000618700 CYBAP13498 195 aa22.49■■□□□ 1.19
UPF3A-211ENST00000618700 CACNB2Q08289 660 aaPredicted RBP22.49■■□□□ 1.19
UPF3A-211ENST00000618700 STXBP2Q15833 593 aa22.49■■□□□ 1.19
UPF3A-211ENST00000618700 SLC9C1Q4G0N8 1177 aa22.49■■□□□ 1.19
UPF3A-211ENST00000618700 FBXO16Q8IX29 292 aaPredicted RBP22.49■■□□□ 1.19
UPF3A-211ENST00000618700 TBCKQ8TEA7 893 aa22.49■■□□□ 1.19
UPF3A-211ENST00000618700 TSPYL2Q9H2G4 693 aaPredicted RBP22.49■■□□□ 1.19
UPF3A-211ENST00000618700 ABHD16BQ9H3Z7 469 aa22.49■■□□□ 1.19
UPF3A-211ENST00000618700 VTA1Q9NP79 307 aa22.49■■□□□ 1.19
UPF3A-211ENST00000618700 FAM205CA6NFA0 338 aa22.48■■□□□ 1.19
UPF3A-211ENST00000618700 EDIL3O43854 480 aa22.48■■□□□ 1.19
UPF3A-211ENST00000618700 STAM2O75886 525 aa22.48■■□□□ 1.19
UPF3A-211ENST00000618700 RGS20O76081 388 aa22.48■■□□□ 1.19
UPF3A-211ENST00000618700 MYCLP12524 364 aaPredicted RBP22.48■■□□□ 1.19
UPF3A-211ENST00000618700 ACVR2BQ13705 512 aa22.48■■□□□ 1.19
UPF3A-211ENST00000618700 PIK3AP1Q6ZUJ8 805 aa22.48■■□□□ 1.19
UPF3A-211ENST00000618700 NOSTRINQ8IVI9 506 aa22.48■■□□□ 1.19
UPF3A-211ENST00000618700 TRPV1Q8NER1 839 aa22.48■■□□□ 1.19
UPF3A-211ENST00000618700 ARMC5Q96C12 935 aa22.48■■□□□ 1.19
UPF3A-211ENST00000618700 INPP4AQ96PE3 977 aaPredicted RBP22.48■■□□□ 1.19
UPF3A-211ENST00000618700 CNPY2Q9Y2B0 182 aa22.48■■□□□ 1.19
UPF3A-211ENST00000618700 VPS37CA5D8V6 355 aaPredicted RBP22.47■■□□□ 1.19
UPF3A-211ENST00000618700 STX6O43752 255 aa22.47■■□□□ 1.19
UPF3A-211ENST00000618700 EIF3JO75822 258 aaKnown RBP22.47■■□□□ 1.19
UPF3A-211ENST00000618700 ZNF865P0CJ78 1059 aaPredicted RBP22.47■■□□□ 1.19
UPF3A-211ENST00000618700 MTMR6Q9Y217 621 aa22.47■■□□□ 1.19
UPF3A-211ENST00000618700 UBIAD1Q9Y5Z9 338 aa22.47■■□□□ 1.19
UPF3A-211ENST00000618700 CIITAP33076 1130 aa22.46■■□□□ 1.19
UPF3A-211ENST00000618700 INF2Q27J81 1249 aa22.46■■□□□ 1.19
UPF3A-211ENST00000618700 PRAMEF19Q5SWL8 479 aa22.46■■□□□ 1.19
UPF3A-211ENST00000618700 TAPT1Q6NXT6 567 aa22.46■■□□□ 1.19
UPF3A-211ENST00000618700 EEPD1Q7L9B9 569 aa22.46■■□□□ 1.19
UPF3A-211ENST00000618700 SP7Q8TDD2 431 aaPredicted RBP22.46■■□□□ 1.19
UPF3A-211ENST00000618700 ZFP91Q96JP5 570 aaPredicted RBP22.46■■□□□ 1.19
UPF3A-211ENST00000618700 ZHX1Q9UKY1 873 aaPredicted RBP22.46■■□□□ 1.19
UPF3A-211ENST00000618700 KIAA1217Q5T5P2 1943 aa22.46■■□□□ 1.19
UPF3A-211ENST00000618700 RBM47A0AV96 593 aaKnown RBP22.45■■□□□ 1.18
UPF3A-211ENST00000618700 PDIA4P13667 645 aaKnown RBP22.45■■□□□ 1.18
UPF3A-211ENST00000618700 ITGB5P18084 799 aa22.45■■□□□ 1.18
UPF3A-211ENST00000618700 USP11P51784 963 aa22.45■■□□□ 1.18
UPF3A-211ENST00000618700 MCTP1Q6DN14 999 aa22.45■■□□□ 1.18
UPF3A-211ENST00000618700 ZNF333Q96JL9 665 aa22.45■■□□□ 1.18
UPF3A-211ENST00000618700 FAM86B1E9PN63 330 aa22.44■■□□□ 1.18
UPF3A-211ENST00000618700 FAM86B2P0C5J1 330 aa22.44■■□□□ 1.18
UPF3A-211ENST00000618700 DDIT3P35638 169 aa22.44■■□□□ 1.18
UPF3A-211ENST00000618700 GNL2Q13823 731 aaKnown RBP22.44■■□□□ 1.18
UPF3A-211ENST00000618700 CEP55Q53EZ4 464 aa22.44■■□□□ 1.18
UPF3A-211ENST00000618700 MOXD1Q6UVY6 613 aa22.44■■□□□ 1.18
UPF3A-211ENST00000618700 NEK8Q86SG6 692 aa22.44■■□□□ 1.18
UPF3A-211ENST00000618700 PDGFCQ9NRA1 345 aa22.44■■□□□ 1.18
UPF3A-211ENST00000618700 RTEL1Q9NZ71 1219 aa22.44■■□□□ 1.18
UPF3A-211ENST00000618700 IGLV3-22A0A075B6J6 115 aa22.43■■□□□ 1.18
UPF3A-211ENST00000618700 CCND3P30281 292 aaPredicted RBP22.43■■□□□ 1.18
UPF3A-211ENST00000618700 SEMA3FQ13275 785 aa22.43■■□□□ 1.18
UPF3A-211ENST00000618700 NIPA1Q7RTP0 329 aa22.43■■□□□ 1.18
UPF3A-211ENST00000618700 GPRASP2Q96D09 838 aa22.43■■□□□ 1.18
UPF3A-211ENST00000618700 MBOAT7Q96N66 472 aa22.43■■□□□ 1.18
UPF3A-211ENST00000618700 MXRA8Q9BRK3 442 aa22.43■■□□□ 1.18
UPF3A-211ENST00000618700 JADE2Q9NQC1 790 aa22.43■■□□□ 1.18
UPF3A-211ENST00000618700 CYP3A7-CYP3A51PA0A087WV96 503 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 CCDC85CA6NKD9 419 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 MEIS1O00470 390 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 SEPT4O43236 478 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 CYP3A7P24462 503 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 ICAM3P32942 547 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 RESTQ13127 1097 aa22.42■■□□□ 1.18
UPF3A-211ENST00000618700 PKP1Q13835 747 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms