RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 SMIM22K7EJ46 135 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 IPO5O00410 1097 aaKnown RBP11.24□□□□□ -0.61
VPS39-214ENST00000614932 YY1P25490 414 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 TUBP50607 506 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 EPHB4P54760 987 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 BYSLQ13895 437 aaKnown RBP11.24□□□□□ -0.61
VPS39-214ENST00000614932 ERFEQ4G0M1 354 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 SPATA5Q8NB90 893 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 LINC00116Q8NCU8 138 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 FGD4Q96M96 766 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 AIFM3Q96NN9 605 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 TRAPPC9Q96Q05 1148 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 SYT15Q9BQS2 421 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 ZKSCAN3Q9BRR0 538 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.24□□□□□ -0.61
VPS39-214ENST00000614932 SRP68Q9UHB9 627 aaKnown RBP11.24□□□□□ -0.61
VPS39-214ENST00000614932 PCDHA7Q9UN72 937 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 DOT1LQ8TEK3 1739 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 UBE2Q2LH0YL09 131 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 FAM200BP0CF97 657 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 ATP2A2P16615 1042 aaKnown RBP11.23□□□□□ -0.61
VPS39-214ENST00000614932 STAT6P42226 847 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 GYG1P46976 350 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 BTG3Q14201 252 aaPredicted RBP11.23□□□□□ -0.61
VPS39-214ENST00000614932 QPCTQ16769 361 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 EMBQ6PCB8 327 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 CYB5R4Q7L1T6 521 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 ERICH1Q86X53 443 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 LPIN2Q92539 896 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 TBC1D7Q9P0N9 293 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 PAIP2BQ9ULR5 123 aaKnown RBP11.23□□□□□ -0.61
VPS39-214ENST00000614932 COL14A1Q05707 1796 aaKnown RBP11.23□□□□□ -0.61
VPS39-214ENST00000614932 SPATA31A5Q5VU36 1347 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 SPATA31A7Q8IWB4 1347 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 LRP6O75581 1613 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 PALM3A6NDB9 673 aaPredicted RBP11.23□□□□□ -0.61
VPS39-214ENST00000614932 TMCC1O94876 653 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 KRT14P02533 472 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 ZFYP08048 801 aaPredicted RBP11.23□□□□□ -0.61
VPS39-214ENST00000614932 CBX3Q13185 183 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 SEPT2Q15019 361 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 IFI16Q16666 785 aaKnown RBP11.23□□□□□ -0.61
VPS39-214ENST00000614932 SPTY2D1Q68D10 685 aaPredicted RBP11.23□□□□□ -0.61
VPS39-214ENST00000614932 CCDC82Q8N4S0 544 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 ARFGAP2Q8N6H7 521 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 ZBTB8BQ8NAP8 495 aaPredicted RBP11.23□□□□□ -0.61
VPS39-214ENST00000614932 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS39-214ENST00000614932 TRPV5Q9NQA5 729 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 SAR1BQ9Y6B6 198 aa11.23□□□□□ -0.61
VPS39-214ENST00000614932 SLC5A1P13866 664 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 FDPSP14324 419 aaKnown RBP11.22□□□□□ -0.61
VPS39-214ENST00000614932 IGHMBP2P38935 993 aaKnown RBP11.22□□□□□ -0.61
VPS39-214ENST00000614932 CHRNDQ07001 517 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 KIAA0753Q2KHM9 967 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 TRIM68Q6AZZ1 485 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 C16orf87Q6PH81 154 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 OLFML1Q6UWY5 402 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 TBC1D1Q86TI0 1168 aaPredicted RBP11.22□□□□□ -0.61
VPS39-214ENST00000614932 MICU3Q86XE3 530 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 ATP11CQ8NB49 1132 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 C1orf131Q8NDD1 294 aaKnown RBP11.22□□□□□ -0.61
VPS39-214ENST00000614932 NCOA7Q8NI08 942 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 SPIRE2Q8WWL2 714 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 MTA3Q9BTC8 594 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.22□□□□□ -0.61
VPS39-214ENST00000614932 CEP131Q9UPN4 1083 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 TRAPPC3O43617 180 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 FLOT1O75955 427 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 NTSR2O95665 410 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 ABL1P00519 1130 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 SLC7A5Q01650 507 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 POSTNQ15063 836 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 GKAP1Q5VSY0 366 aaPredicted RBP11.22□□□□□ -0.61
VPS39-214ENST00000614932 OLFM4Q6UX06 510 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 SLF2Q8IX21 1173 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 KCNMB3Q9NPA1 279 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 BARX2Q9UMQ3 279 aaPredicted RBP11.22□□□□□ -0.61
VPS39-214ENST00000614932 SYNPO2Q9UMS6 1093 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 ATP8A1Q9Y2Q0 1164 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 NUP98P52948 1817 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 CCT8L1PA6NM43 557 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 HMGB1P1B2RPK0 211 aaPredicted RBP11.22□□□□□ -0.61
VPS39-214ENST00000614932 UBAP1LF5GYI3 381 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 CPLX1O14810 134 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 PFDN1O60925 122 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 TRIM37O94972 964 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 CCDC166P0CW27 439 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 ZFXP17010 805 aaPredicted RBP11.22□□□□□ -0.61
VPS39-214ENST00000614932 SP100P23497 879 aaPredicted RBP11.22□□□□□ -0.61
VPS39-214ENST00000614932 ADCY1Q08828 1119 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 PKN1Q16512 942 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 CCDC152Q4G0S7 254 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 IQCEQ6IPM2 695 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 SESTD1Q86VW0 696 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 MB21D2Q8IYB1 491 aaPredicted RBP11.22□□□□□ -0.61
VPS39-214ENST00000614932 PHKBQ93100 1093 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 CAVIN3Q969G5 261 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 ATP6V1G3Q96LB4 118 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 PCDH18Q9HCL0 1135 aa11.22□□□□□ -0.61
VPS39-214ENST00000614932 LRP2BPQ9P2M1 347 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms