RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ERICH6BQ5W0A0 696 aa6.43□□□□□ -1.38
LINC00540-201ENST00000611481 PANK1Q8TE04 598 aa6.43□□□□□ -1.38
LINC00540-201ENST00000611481 ZMYM5Q9UJ78 669 aa6.43□□□□□ -1.38
LINC00540-201ENST00000611481 IVNS1ABPQ9Y6Y0 642 aa6.43□□□□□ -1.38
LINC00540-201ENST00000611481 RPGRIP1LQ68CZ1 1315 aa6.43□□□□□ -1.38
LINC00540-201ENST00000611481 PRR36Q9H6K5 1346 aa6.43□□□□□ -1.38
LINC00540-201ENST00000611481 PIK3C2AO00443 1686 aa6.42□□□□□ -1.38
LINC00540-201ENST00000611481 YTHDC2Q9H6S0 1430 aaKnown RBP6.42□□□□□ -1.38
LINC00540-201ENST00000611481 NRDCO43847 1150 aa6.42□□□□□ -1.38
LINC00540-201ENST00000611481 KIR2DL1P43626 348 aaPredicted RBP6.42□□□□□ -1.38
LINC00540-201ENST00000611481 KIR2DL2P43627 348 aaPredicted RBP6.42□□□□□ -1.38
LINC00540-201ENST00000611481 CHMP4BP1P59074 171 aa6.42□□□□□ -1.38
LINC00540-201ENST00000611481 KRTAP5-3Q6L8H2 238 aa6.42□□□□□ -1.38
LINC00540-201ENST00000611481 BNC2Q6ZN30 1099 aaPredicted RBP6.42□□□□□ -1.38
LINC00540-201ENST00000611481 SYTL5Q8TDW5 730 aaPredicted RBP6.42□□□□□ -1.38
LINC00540-201ENST00000611481 DUSP9Q99956 384 aaKnown RBP6.42□□□□□ -1.38
LINC00540-201ENST00000611481 REV1Q9UBZ9 1251 aa6.42□□□□□ -1.38
LINC00540-201ENST00000611481 KLHL3Q9UH77 587 aa6.42□□□□□ -1.38
LINC00540-201ENST00000611481 ADGRF5Q8IZF2 1346 aa6.42□□□□□ -1.38
LINC00540-201ENST00000611481 CUL9Q8IWT3 2517 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 A0A0G2JLW4 131 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 FAM221AA4D161 298 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 OTOL1A6NHN0 477 aaPredicted RBP6.41□□□□□ -1.38
LINC00540-201ENST00000611481 CHURC1-FNTBB4DL54 471 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 N4BP3O15049 544 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 USP2O75604 605 aaPredicted RBP6.41□□□□□ -1.38
LINC00540-201ENST00000611481 EFEMP2O95967 443 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 ST13P50502 369 aaKnown RBP6.41□□□□□ -1.38
LINC00540-201ENST00000611481 EPHB3P54753 998 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 MAP2K1Q02750 393 aaPredicted RBP6.41□□□□□ -1.38
LINC00540-201ENST00000611481 NMIQ13287 307 aaPredicted RBP6.41□□□□□ -1.38
LINC00540-201ENST00000611481 TAF1CQ15572 869 aaPredicted RBP6.41□□□□□ -1.38
LINC00540-201ENST00000611481 OLFML2BQ68BL8 750 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 SMIM5Q71RC9 77 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 SLC17A8Q8NDX2 589 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 GATAD2BQ8WXI9 593 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 MAP6Q96JE9 813 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 PRAM1Q96QH2 718 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 WDR17Q8IZU2 1322 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 PPLO60437 1756 aa6.41□□□□□ -1.38
LINC00540-201ENST00000611481 VIRMAQ69YN4 1812 aaKnown RBP6.41□□□□□ -1.38
LINC00540-201ENST00000611481 GCP02774 474 aa6.4□□□□□ -1.38
LINC00540-201ENST00000611481 VIPR1P32241 457 aa6.4□□□□□ -1.38
LINC00540-201ENST00000611481 LMNB2Q03252 620 aa6.4□□□□□ -1.38
LINC00540-201ENST00000611481 SKOR2Q2VWA4 1001 aaPredicted RBP6.4□□□□□ -1.38
LINC00540-201ENST00000611481 CEP128Q6ZU80 1094 aa6.4□□□□□ -1.38
LINC00540-201ENST00000611481 PRRT2Q7Z6L0 340 aaPredicted RBP6.4□□□□□ -1.38
LINC00540-201ENST00000611481 PHACTR4Q8IZ21 702 aa6.4□□□□□ -1.38
LINC00540-201ENST00000611481 USHBP1Q8N6Y0 703 aa6.4□□□□□ -1.38
LINC00540-201ENST00000611481 DAGLBQ8NCG7 672 aa6.4□□□□□ -1.38
LINC00540-201ENST00000611481 HDAC8Q9BY41 377 aa6.4□□□□□ -1.38
LINC00540-201ENST00000611481 CNTD2Q9H8S5 307 aa6.4□□□□□ -1.38
LINC00540-201ENST00000611481 RNF19AQ9NV58 838 aa6.4□□□□□ -1.38
LINC00540-201ENST00000611481 CCNL1Q9UK58 526 aaPredicted RBP6.4□□□□□ -1.38
LINC00540-201ENST00000611481 COL18A1P39060 1754 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 N4BP2Q86UW6 1770 aaPredicted RBP6.39□□□□□ -1.39
LINC00540-201ENST00000611481 SSU72P8A0A1W2PR75 194 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 SLC22A31A6NKX4 558 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 ABLIM1O14639 778 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 HTR3BO95264 441 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 CELA3BP08861 270 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 PNLIPP16233 465 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 GBP1P32455 592 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 PCBP3P57721 371 aaKnown RBP6.39□□□□□ -1.39
LINC00540-201ENST00000611481 YBX1P67809 324 aaKnown RBP6.39□□□□□ -1.39
LINC00540-201ENST00000611481 KCNA1Q09470 495 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 CAMK2GQ13555 558 aaPredicted RBP6.39□□□□□ -1.39
LINC00540-201ENST00000611481 SP8Q8IXZ3 490 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 VWCEQ96DN2 955 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 KIF2CQ99661 725 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 FOXP3Q9BZS1 431 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 POGKQ9P215 609 aa6.39□□□□□ -1.39
LINC00540-201ENST00000611481 GLTPD2A6NH11 291 aa6.38□□□□□ -1.39
LINC00540-201ENST00000611481 IRS4O14654 1257 aaPredicted RBP6.38□□□□□ -1.39
LINC00540-201ENST00000611481 F13A1P00488 732 aa6.38□□□□□ -1.39
LINC00540-201ENST00000611481 DPEP1P16444 411 aa6.38□□□□□ -1.39
LINC00540-201ENST00000611481 FXR1P51114 621 aaKnown RBP eCLIP6.38□□□□□ -1.39
LINC00540-201ENST00000611481 RNF4P78317 190 aa6.38□□□□□ -1.39
LINC00540-201ENST00000611481 ZNF655Q8N720 491 aaPredicted RBP6.38□□□□□ -1.39
LINC00540-201ENST00000611481 FEZF2Q8TBJ5 459 aa6.38□□□□□ -1.39
LINC00540-201ENST00000611481 MZB1Q8WU39 189 aa6.38□□□□□ -1.39
LINC00540-201ENST00000611481 TCTN2Q96GX1 697 aa6.38□□□□□ -1.39
LINC00540-201ENST00000611481 HHIPL1Q96JK4 782 aa6.38□□□□□ -1.39
LINC00540-201ENST00000611481 EPB41L4AQ9HCS5 686 aaPredicted RBP6.38□□□□□ -1.39
LINC00540-201ENST00000611481 TCFL5Q9UL49 500 aa6.38□□□□□ -1.39
LINC00540-201ENST00000611481 EIF3AQ14152 1382 aaKnown RBP6.38□□□□□ -1.39
LINC00540-201ENST00000611481 VPS8Q8N3P4 1428 aa6.38□□□□□ -1.39
LINC00540-201ENST00000611481 ABCC6O95255 1503 aa6.37□□□□□ -1.39
LINC00540-201ENST00000611481 PPIP5K1Q6PFW1 1433 aa6.37□□□□□ -1.39
LINC00540-201ENST00000611481 PF4P02776 101 aa6.37□□□□□ -1.39
LINC00540-201ENST00000611481 ERVFRD-1P60508 538 aa6.37□□□□□ -1.39
LINC00540-201ENST00000611481 TGFB2P61812 414 aa6.37□□□□□ -1.39
LINC00540-201ENST00000611481 FAM50AQ14320 339 aaKnown RBP6.37□□□□□ -1.39
LINC00540-201ENST00000611481 EAPPQ56P03 285 aaPredicted RBP6.37□□□□□ -1.39
LINC00540-201ENST00000611481 CNKSR3Q6P9H4 555 aa6.37□□□□□ -1.39
LINC00540-201ENST00000611481 LINC00116Q8NCU8 138 aa6.37□□□□□ -1.39
LINC00540-201ENST00000611481 BORCS6Q96GS4 357 aa6.37□□□□□ -1.39
LINC00540-201ENST00000611481 TRAIPQ9BWF2 469 aa6.37□□□□□ -1.39
LINC00540-201ENST00000611481 POLR3KQ9Y2Y1 108 aaPredicted RBP6.37□□□□□ -1.39
LINC00540-201ENST00000611481 KIAA1551Q9HCM1 1747 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms