RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ERVK-21P61565 698 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 WDR5P61964 334 aaKnown RBP7.36□□□□□ -1.23
CUX1-220ENST00000607092 TFF2Q03403 129 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 ZNF543Q08ER8 600 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 PTK7Q13308 1070 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 GRB10Q13322 594 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 PDAP1Q13442 181 aaKnown RBP7.36□□□□□ -1.23
CUX1-220ENST00000607092 LAMC2Q13753 1193 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 MCMDC2Q4G0Z9 681 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 TIGD5Q53EQ6 642 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 SLC30A10Q6XR72 485 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 MFSD6Q6ZSS7 791 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 DGKHQ86XP1 1220 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 PI4K2BQ8TCG2 481 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 EMID1Q96A84 441 aaPredicted RBP7.36□□□□□ -1.23
CUX1-220ENST00000607092 TMEM47Q9BQJ4 181 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 MTMR7Q9Y216 660 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 MRPL11Q9Y3B7 192 aaKnown RBP7.36□□□□□ -1.23
CUX1-220ENST00000607092 FARP1Q9Y4F1 1045 aaPredicted RBP7.36□□□□□ -1.23
CUX1-220ENST00000607092 INSL6Q9Y581 213 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 SCN10AQ9Y5Y9 1956 aa7.36□□□□□ -1.23
CUX1-220ENST00000607092 XIRP2A4UGR9 3374 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 PI4K2BG5E9Z4 385 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 CAND2O75155 1236 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 PPFIA4O75335 1185 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 AMHP03971 560 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 MMP3P08254 477 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 TGFB3P10600 412 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 GNAT1P11488 350 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 SLC16A2P36021 539 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 KCNQ1P51787 676 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 CTDSPL2Q05D32 466 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 AAMPQ13685 434 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 CSPP1Q1MSJ5 1256 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 ASPRV1Q53RT3 343 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 RRP12Q5JTH9 1297 aaKnown RBP7.35□□□□□ -1.23
CUX1-220ENST00000607092 FAM43BQ6ZT52 329 aaPredicted RBP7.35□□□□□ -1.23
CUX1-220ENST00000607092 PPTC7Q8NI37 304 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 CLEC4DQ8WXI8 215 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 RMDN3Q96TC7 470 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 SEC62Q99442 399 aaKnown RBP7.35□□□□□ -1.23
CUX1-220ENST00000607092 LRFN3Q9BTN0 628 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 UPF3BQ9BZI7 483 aaKnown RBP7.35□□□□□ -1.23
CUX1-220ENST00000607092 UBE2ZQ9H832 354 aaPredicted RBP7.35□□□□□ -1.23
CUX1-220ENST00000607092 KAT14Q9H8E8 782 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 CERS4Q9HA82 394 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 GPCPD1Q9NPB8 672 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 GTF2IRD1Q9UHL9 959 aa7.35□□□□□ -1.23
CUX1-220ENST00000607092 FRMPD2Q68DX3 1309 aaPredicted RBP7.34□□□□□ -1.23
CUX1-220ENST00000607092 PRR33A8MZF0 331 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 NMT2O60551 498 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 LGR5O75473 907 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 F2P00734 622 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 FGAP02671 866 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 RPLP2P05387 115 aaKnown RBP7.34□□□□□ -1.23
CUX1-220ENST00000607092 HSPD1P10809 573 aaKnown RBP7.34□□□□□ -1.23
CUX1-220ENST00000607092 CHMP4BP1P59074 171 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 SNAP25P60880 206 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 LEXMQ3ZCV2 418 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 ARHGEF16Q5VV41 709 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 TSHZ3Q63HK5 1081 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 TTBK2Q6IQ55 1244 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 CCDC62Q6P9F0 684 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 DHX37Q8IY37 1157 aaKnown RBP7.34□□□□□ -1.23
CUX1-220ENST00000607092 GJD3Q8N144 294 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 AFG1LQ8WV93 481 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 VWCEQ96DN2 955 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 POP1Q99575 1024 aaKnown RBP7.34□□□□□ -1.23
CUX1-220ENST00000607092 WDR70Q9NW82 654 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 PRKAG3Q9UGI9 489 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 RWDD3Q9Y3V2 267 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 MRVI1Q9Y6F6 885 aa7.34□□□□□ -1.23
CUX1-220ENST00000607092 CACNA1HO95180 2353 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 CCDC171Q6TFL3 1326 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 GBF1Q92538 1859 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 TANC1Q9C0D5 1861 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.33□□□□□ -1.24
CUX1-220ENST00000607092 HIP1O00291 1037 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 ZNF213O14771 459 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 DHX16O60231 1041 aaKnown RBP7.33□□□□□ -1.24
CUX1-220ENST00000607092 CKBP12277 381 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 SSTR3P32745 418 aaPredicted RBP7.33□□□□□ -1.24
CUX1-220ENST00000607092 PSEN2P49810 448 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 ARHGAP1Q07960 439 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 PKN1Q16512 942 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 CDC37Q16543 378 aaPredicted RBP7.33□□□□□ -1.24
CUX1-220ENST00000607092 KIAA0753Q2KHM9 967 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 GNPTABQ3T906 1256 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 USH1GQ495M9 461 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 TMEM63BQ5T3F8 832 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 GDF6Q6KF10 455 aaPredicted RBP7.33□□□□□ -1.24
CUX1-220ENST00000607092 SEPT14Q6ZU15 432 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 FBXO11Q86XK2 927 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 PNMA1Q8ND90 353 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 FBXO22Q8NEZ5 403 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 SYTL5Q8TDW5 730 aaPredicted RBP7.33□□□□□ -1.24
CUX1-220ENST00000607092 SEPT8Q92599 483 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 APBB2Q92870 758 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 PPP2R3CQ969Q6 453 aa7.33□□□□□ -1.24
CUX1-220ENST00000607092 CHMP4CQ96CF2 233 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms