RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 PDCD2LQ9BRP1 358 aa18.65■□□□□ 0.58
LSM4-206ENST00000600289 SENP6Q9GZR1 1112 aaPredicted RBP18.65■□□□□ 0.58
LSM4-206ENST00000600289 NKRFO15226 690 aaKnown RBP eCLIP18.64■□□□□ 0.57
LSM4-206ENST00000600289 HOXA13P31271 388 aaPredicted RBP18.64■□□□□ 0.57
LSM4-206ENST00000600289 C8orf34Q49A92 452 aa18.64■□□□□ 0.57
LSM4-206ENST00000600289 TLK2Q86UE8 772 aa18.64■□□□□ 0.57
LSM4-206ENST00000600289 CCDC82Q8N4S0 544 aa18.64■□□□□ 0.57
LSM4-206ENST00000600289 ZNF274Q96GC6 653 aaPredicted RBP18.64■□□□□ 0.57
LSM4-206ENST00000600289 WDR11Q9BZH6 1224 aa18.64■□□□□ 0.57
LSM4-206ENST00000600289 UPF3BQ9BZI7 483 aaKnown RBP18.64■□□□□ 0.57
LSM4-206ENST00000600289 MYADML2A6NDP7 307 aa18.63■□□□□ 0.57
LSM4-206ENST00000600289 MEIS2O14770 477 aa18.63■□□□□ 0.57
LSM4-206ENST00000600289 EIF3JO75822 258 aaKnown RBP18.63■□□□□ 0.57
LSM4-206ENST00000600289 SEC24BO95487 1268 aa18.63■□□□□ 0.57
LSM4-206ENST00000600289 NR3C2P08235 984 aa18.63■□□□□ 0.57
LSM4-206ENST00000600289 C6orf222P0C671 652 aaPredicted RBP18.63■□□□□ 0.57
LSM4-206ENST00000600289 EIF2AK2P19525 551 aaKnown RBP18.63■□□□□ 0.57
LSM4-206ENST00000600289 PDIA3P30101 505 aaKnown RBP18.63■□□□□ 0.57
LSM4-206ENST00000600289 ADD1P35611 737 aaKnown RBP18.63■□□□□ 0.57
LSM4-206ENST00000600289 ACLYP53396 1101 aa18.63■□□□□ 0.57
LSM4-206ENST00000600289 PGM5Q15124 567 aa18.63■□□□□ 0.57
LSM4-206ENST00000600289 A0A1W2PQ45 241 aaPredicted RBP18.62■□□□□ 0.57
LSM4-206ENST00000600289 A0A1W2PQY0 241 aa18.62■□□□□ 0.57
LSM4-206ENST00000600289 TTLL4Q14679 1199 aa18.62■□□□□ 0.57
LSM4-206ENST00000600289 NTRK3Q16288 839 aa18.62■□□□□ 0.57
LSM4-206ENST00000600289 WWC2Q6AWC2 1192 aa18.62■□□□□ 0.57
LSM4-206ENST00000600289 CCDC62Q6P9F0 684 aa18.62■□□□□ 0.57
LSM4-206ENST00000600289 SLC39A5Q6ZMH5 540 aa18.62■□□□□ 0.57
LSM4-206ENST00000600289 VSIG10LQ86VR7 867 aa18.62■□□□□ 0.57
LSM4-206ENST00000600289 CUL5Q93034 780 aa18.62■□□□□ 0.57
LSM4-206ENST00000600289 AP5M1Q9H0R1 490 aa18.62■□□□□ 0.57
LSM4-206ENST00000600289 PDRG1Q9NUG6 133 aa18.62■□□□□ 0.57
LSM4-206ENST00000600289 NAP1L2Q9ULW6 460 aaPredicted RBP18.62■□□□□ 0.57
LSM4-206ENST00000600289 ELP1O95163 1332 aa18.61■□□□□ 0.57
LSM4-206ENST00000600289 hCG_1642624A0A1W2PR95 340 aa18.61■□□□□ 0.57
LSM4-206ENST00000600289 STAM2O75886 525 aa18.61■□□□□ 0.57
LSM4-206ENST00000600289 MYCNP04198 464 aaPredicted RBP18.61■□□□□ 0.57
LSM4-206ENST00000600289 IFNAR1P17181 557 aa18.61■□□□□ 0.57
LSM4-206ENST00000600289 KCNA10Q16322 511 aa18.61■□□□□ 0.57
LSM4-206ENST00000600289 PFKFB3Q16875 520 aaPredicted RBP18.61■□□□□ 0.57
LSM4-206ENST00000600289 TMEM63BQ5T3F8 832 aa18.61■□□□□ 0.57
LSM4-206ENST00000600289 HEATR3Q7Z4Q2 680 aa18.61■□□□□ 0.57
LSM4-206ENST00000600289 LBHD1Q9BQE6 289 aaPredicted RBP18.61■□□□□ 0.57
LSM4-206ENST00000600289 RNF26Q9BY78 433 aaPredicted RBP18.61■□□□□ 0.57
LSM4-206ENST00000600289 PSTPIP2Q9H939 334 aa18.61■□□□□ 0.57
LSM4-206ENST00000600289 BARHL2Q9NY43 387 aa18.61■□□□□ 0.57
LSM4-206ENST00000600289 V9GY48 417 aaPredicted RBP18.61■□□□□ 0.57
LSM4-206ENST00000600289 SCN10AQ9Y5Y9 1956 aa18.61■□□□□ 0.57
LSM4-206ENST00000600289 STXBP3O00186 592 aa18.6■□□□□ 0.57
LSM4-206ENST00000600289 PRPF3O43395 683 aaKnown RBP18.6■□□□□ 0.57
LSM4-206ENST00000600289 ASGR1P07306 291 aa18.6■□□□□ 0.57
LSM4-206ENST00000600289 CCND2P30279 289 aa18.6■□□□□ 0.57
LSM4-206ENST00000600289 SHHQ15465 462 aa18.6■□□□□ 0.57
LSM4-206ENST00000600289 FSCN1Q16658 493 aaKnown RBP18.6■□□□□ 0.57
LSM4-206ENST00000600289 GNASQ5JWF2 1037 aa18.6■□□□□ 0.57
LSM4-206ENST00000600289 C9orf50Q5SZB4 431 aa18.6■□□□□ 0.57
LSM4-206ENST00000600289 XRRA1Q6P2D8 792 aa18.6■□□□□ 0.57
LSM4-206ENST00000600289 KCNV1Q6PIU1 500 aa18.6■□□□□ 0.57
LSM4-206ENST00000600289 NOL8Q76FK4 1167 aaKnown RBP18.6■□□□□ 0.57
LSM4-206ENST00000600289 FCHSD1Q86WN1 690 aa18.6■□□□□ 0.57
LSM4-206ENST00000600289 SMARCC2Q8TAQ2 1214 aa18.6■□□□□ 0.57
LSM4-206ENST00000600289 GPKOWQ92917 476 aaPredicted RBP eCLIP18.6■□□□□ 0.57
LSM4-206ENST00000600289 DOCK5Q9H7D0 1870 aa18.6■□□□□ 0.57
LSM4-206ENST00000600289 REV3LO60673 3130 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 DYNC1LI2O43237 492 aaPredicted RBP18.59■□□□□ 0.57
LSM4-206ENST00000600289 CABYRO75952 493 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 ARIH2O95376 493 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 TXNP10599 105 aaKnown RBP18.59■□□□□ 0.57
LSM4-206ENST00000600289 SCG2P13521 617 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 CPT1AP50416 773 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 RTP1P59025 263 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 IRX5P78411 483 aaPredicted RBP18.59■□□□□ 0.57
LSM4-206ENST00000600289 ANKRD1Q15327 319 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 TYW1BQ6NUM6 668 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 USP17L6PQ6QN14 398 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 IL31RAQ8NI17 732 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 GLT1D1Q96MS3 346 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 GLT8D2Q9H1C3 349 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 RIC8AQ9NPQ8 531 aa18.59■□□□□ 0.57
LSM4-206ENST00000600289 ESYT2A0FGR8 921 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 A6NJR5 290 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 ZEB2O60315 1214 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 RGS20O76081 388 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 NAPAP54920 295 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 SMAD3P84022 425 aaKnown RBP18.58■□□□□ 0.56
LSM4-206ENST00000600289 BEX3Q00994 111 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 PKN1Q16512 942 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 PCNX4Q63HM2 1172 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 OR6J1Q8NGC5 347 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 EMID1Q96A84 441 aaPredicted RBP18.58■□□□□ 0.56
LSM4-206ENST00000600289 FERMT2Q96AC1 680 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 SEZ6LQ9BYH1 1024 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 STARD7Q9NQZ5 370 aa18.58■□□□□ 0.56
LSM4-206ENST00000600289 DDX41Q9UJV9 622 aaKnown RBP18.58■□□□□ 0.56
LSM4-206ENST00000600289 TGFB3P10600 412 aa18.57■□□□□ 0.56
LSM4-206ENST00000600289 MYCLP12524 364 aaPredicted RBP18.57■□□□□ 0.56
LSM4-206ENST00000600289 PTGS1P23219 599 aa18.57■□□□□ 0.56
LSM4-206ENST00000600289 ATN1P54259 1190 aaPredicted RBP18.57■□□□□ 0.56
LSM4-206ENST00000600289 MRPS9P82933 396 aaKnown RBP18.57■□□□□ 0.56
LSM4-206ENST00000600289 SEPT14Q6ZU15 432 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms