RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 TMEM47Q9BQJ4 181 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 PBX4Q9BYU1 374 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 HIPK3Q9H422 1215 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 KAT14Q9H8E8 782 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 VTA1Q9NP79 307 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 ADD3Q9UEY8 706 aaKnown RBP14.64□□□□□ -0.07
UPF1-208ENST00000600012 MTMR7Q9Y216 660 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 BAZ2BQ9UIF8 2168 aaKnown RBP14.64□□□□□ -0.07
UPF1-208ENST00000600012 PPFIA3O75145 1194 aa14.63□□□□□ -0.07
UPF1-208ENST00000600012 DDAH1O94760 285 aa14.63□□□□□ -0.07
UPF1-208ENST00000600012 CTDNEP1O95476 244 aa14.63□□□□□ -0.07
UPF1-208ENST00000600012 GJB2P29033 226 aa14.63□□□□□ -0.07
UPF1-208ENST00000600012 DDIT3P35638 169 aa14.63□□□□□ -0.07
UPF1-208ENST00000600012 RAB30Q15771 203 aa14.63□□□□□ -0.07
UPF1-208ENST00000600012 TAPT1Q6NXT6 567 aa14.63□□□□□ -0.07
UPF1-208ENST00000600012 EEPD1Q7L9B9 569 aa14.63□□□□□ -0.07
UPF1-208ENST00000600012 NSUN7Q8NE18 718 aaKnown RBP14.63□□□□□ -0.07
UPF1-208ENST00000600012 HERVK_113Q902F9 699 aa14.63□□□□□ -0.07
UPF1-208ENST00000600012 GAS2L1Q99501 681 aaPredicted RBP14.63□□□□□ -0.07
UPF1-208ENST00000600012 RANBP17Q9H2T7 1088 aaKnown RBP14.63□□□□□ -0.07
UPF1-208ENST00000600012 PDGFCQ9NRA1 345 aa14.63□□□□□ -0.07
UPF1-208ENST00000600012 LOC102724159A0A0B4J2E5 919 aa14.62□□□□□ -0.07
UPF1-208ENST00000600012 PTPDC1A2A3K4 754 aa14.62□□□□□ -0.07
UPF1-208ENST00000600012 GRXCR1A8MXD5 290 aa14.62□□□□□ -0.07
UPF1-208ENST00000600012 TOP1P11387 765 aaKnown RBP14.62□□□□□ -0.07
UPF1-208ENST00000600012 ADD1P35611 737 aaKnown RBP14.62□□□□□ -0.07
UPF1-208ENST00000600012 PBX2P40425 430 aa14.62□□□□□ -0.07
UPF1-208ENST00000600012 PWP2Q15269 919 aaKnown RBP14.62□□□□□ -0.07
UPF1-208ENST00000600012 RTN1Q16799 776 aa14.62□□□□□ -0.07
UPF1-208ENST00000600012 BTNL9Q6UXG8 535 aa14.62□□□□□ -0.07
UPF1-208ENST00000600012 USP38Q8NB14 1042 aa14.62□□□□□ -0.07
UPF1-208ENST00000600012 PNMA1Q8ND90 353 aa14.62□□□□□ -0.07
UPF1-208ENST00000600012 FAM217BQ9NTX9 383 aaPredicted RBP14.62□□□□□ -0.07
UPF1-208ENST00000600012 MSRAQ9UJ68 235 aa14.62□□□□□ -0.07
UPF1-208ENST00000600012 DDX49Q9Y6V7 483 aaKnown RBP14.62□□□□□ -0.07
UPF1-208ENST00000600012 GRIN2DO15399 1336 aa14.62□□□□□ -0.07
UPF1-208ENST00000600012 VCANP13611 3396 aa14.61□□□□□ -0.07
UPF1-208ENST00000600012 FGBP02675 491 aa14.61□□□□□ -0.07
UPF1-208ENST00000600012 PTGS1P23219 599 aa14.61□□□□□ -0.07
UPF1-208ENST00000600012 ALDH5A1P51649 535 aaPredicted RBP14.61□□□□□ -0.07
UPF1-208ENST00000600012 TROAPQ12815 778 aa14.61□□□□□ -0.07
UPF1-208ENST00000600012 DUSP28Q4G0W2 176 aa14.61□□□□□ -0.07
UPF1-208ENST00000600012 SYDE2Q5VT97 1194 aa14.61□□□□□ -0.07
UPF1-208ENST00000600012 TTBK2Q6IQ55 1244 aa14.61□□□□□ -0.07
UPF1-208ENST00000600012 SMARCC2Q8TAQ2 1214 aa14.61□□□□□ -0.07
UPF1-208ENST00000600012 LLPHQ9BRT6 129 aaKnown RBP14.61□□□□□ -0.07
UPF1-208ENST00000600012 NOC4LQ9BVI4 516 aaKnown RBP14.61□□□□□ -0.07
UPF1-208ENST00000600012 PNMA2Q9UL42 364 aa14.61□□□□□ -0.07
UPF1-208ENST00000600012 UMODL1Q5DID0 1318 aa14.61□□□□□ -0.07
UPF1-208ENST00000600012 MYH15Q9Y2K3 1946 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 SCN10AQ9Y5Y9 1956 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 NFIBO00712 420 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 CPLX1O14810 134 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 B4GALT4O60513 344 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 CALM1P0DP23 149 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 CALM2P0DP24 149 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 CALM3P0DP25 149 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 SLC16A2P36021 539 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 RCAN1P53805 252 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 PSMC6P62333 389 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 BAATQ14032 418 aaPredicted RBP14.6□□□□□ -0.07
UPF1-208ENST00000600012 TJAP1Q5JTD0 557 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 RPUSD2Q8IZ73 545 aaKnown RBP14.6□□□□□ -0.07
UPF1-208ENST00000600012 PURBQ96QR8 312 aaKnown RBP14.6□□□□□ -0.07
UPF1-208ENST00000600012 TRPV6Q9H1D0 765 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 PRDM12Q9H4Q4 367 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 POLR3EQ9NVU0 708 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 CHMP5Q9NZZ3 219 aa14.6□□□□□ -0.07
UPF1-208ENST00000600012 CXXC1Q9P0U4 656 aaPredicted RBP14.6□□□□□ -0.07
UPF1-208ENST00000600012 DHX16O60231 1041 aaKnown RBP14.59□□□□□ -0.07
UPF1-208ENST00000600012 PLEKHA8P1O95397 391 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 CPT1AP50416 773 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 CCL23P55773 120 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 PKP1Q13835 747 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 GRM4Q14833 912 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 NTRK3Q16288 839 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 TMEM63BQ5T3F8 832 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 OTOP2Q7RTS6 562 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 CMTR1Q8N1G2 835 aaKnown RBP14.59□□□□□ -0.07
UPF1-208ENST00000600012 FANCBQ8NB91 859 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 CTCFLQ8NI51 663 aaPredicted RBP14.59□□□□□ -0.07
UPF1-208ENST00000600012 MPHOSPH6Q99547 160 aaKnown RBP14.59□□□□□ -0.07
UPF1-208ENST00000600012 WDR11Q9BZH6 1224 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 WNT8AQ9H1J5 351 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 GPCPD1Q9NPB8 672 aa14.59□□□□□ -0.07
UPF1-208ENST00000600012 CIZ1Q9ULV3 898 aaPredicted RBP14.59□□□□□ -0.07
UPF1-208ENST00000600012 FRMPD2Q68DX3 1309 aaPredicted RBP14.59□□□□□ -0.07
UPF1-208ENST00000600012 RBM47A0AV96 593 aaKnown RBP14.58□□□□□ -0.08
UPF1-208ENST00000600012 PFKMP08237 780 aa14.58□□□□□ -0.08
UPF1-208ENST00000600012 SUPT20HL2P0C7V6 817 aa14.58□□□□□ -0.08
UPF1-208ENST00000600012 PDHBP11177 359 aa14.58□□□□□ -0.08
UPF1-208ENST00000600012 FOSBP53539 338 aa14.58□□□□□ -0.08
UPF1-208ENST00000600012 CPLX2Q6PUV4 134 aaKnown RBP14.58□□□□□ -0.08
UPF1-208ENST00000600012 SLC30A10Q6XR72 485 aa14.58□□□□□ -0.08
UPF1-208ENST00000600012 RNF207Q6ZRF8 634 aa14.58□□□□□ -0.08
UPF1-208ENST00000600012 PHKBQ93100 1093 aa14.58□□□□□ -0.08
UPF1-208ENST00000600012 NKX2-4Q9H2Z4 354 aa14.58□□□□□ -0.08
UPF1-208ENST00000600012 SLC28A3Q9HAS3 691 aa14.58□□□□□ -0.08
UPF1-208ENST00000600012 RBM28Q9NW13 759 aaKnown RBP14.58□□□□□ -0.08
UPF1-208ENST00000600012 NKRFO15226 690 aaKnown RBP eCLIP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms