RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 CALM1P0DP23 149 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 CALM2P0DP24 149 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 CALM3P0DP25 149 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 RAG1P15918 1043 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 CPT1AP50416 773 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 MRPS9P82933 396 aaKnown RBP14.05□□□□□ -0.16
LIG1-217ENST00000599165 SP2Q02086 613 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 TYW1BQ6NUM6 668 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 USP17L6PQ6QN14 398 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 FCHSD1Q86WN1 690 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 AFG1LQ8WV93 481 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 KAT2BQ92831 832 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 VTI1AQ96AJ9 217 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 RRP36Q96EU6 259 aaKnown RBP14.05□□□□□ -0.16
LIG1-217ENST00000599165 LZTS2Q9BRK4 669 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 BCAS3Q9H6U6 928 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 PPP4R2Q9NY27 417 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 MROH7Q68CQ1 1323 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 TRIP12Q14669 1992 aaPredicted RBP14.05□□□□□ -0.16
LIG1-217ENST00000599165 TANC1Q9C0D5 1861 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 B4DLN1 442 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 PIK3CDO00329 1044 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 ZEB2O60315 1214 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 NEFLP07196 543 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 MYCLP12524 364 aaPredicted RBP14.04□□□□□ -0.16
LIG1-217ENST00000599165 CDC27P30260 824 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 GNAQP50148 359 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 MRPL12P52815 198 aaKnown RBP14.04□□□□□ -0.16
LIG1-217ENST00000599165 SEMA3FQ13275 785 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 CCDC82Q8N4S0 544 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 EMID1Q96A84 441 aaPredicted RBP14.04□□□□□ -0.16
LIG1-217ENST00000599165 CTAGE1Q96RT6 745 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 MTG1Q9BT17 334 aaPredicted RBP14.04□□□□□ -0.16
LIG1-217ENST00000599165 ALDH8A1Q9H2A2 487 aaPredicted RBP14.04□□□□□ -0.16
LIG1-217ENST00000599165 TRMT13Q9NUP7 481 aaKnown RBP14.04□□□□□ -0.16
LIG1-217ENST00000599165 POLR3EQ9NVU0 708 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 CDH23Q9H251 3354 aa14.04□□□□□ -0.16
LIG1-217ENST00000599165 TET1Q8NFU7 2136 aa14.03□□□□□ -0.16
LIG1-217ENST00000599165 RBAK-RBAKDNI3L0D1 243 aa14.03□□□□□ -0.16
LIG1-217ENST00000599165 GH1P01241 217 aa14.03□□□□□ -0.16
LIG1-217ENST00000599165 HOXD8P13378 290 aaPredicted RBP14.03□□□□□ -0.16
LIG1-217ENST00000599165 TRAF1Q13077 416 aa14.03□□□□□ -0.16
LIG1-217ENST00000599165 KRT32Q14532 448 aa14.03□□□□□ -0.16
LIG1-217ENST00000599165 NBPF20Q3BBV1 942 aa14.03□□□□□ -0.16
LIG1-217ENST00000599165 MFSD5Q6N075 450 aa14.03□□□□□ -0.16
LIG1-217ENST00000599165 JAKMIP1Q96N16 626 aaKnown RBP14.03□□□□□ -0.16
LIG1-217ENST00000599165 NOC4LQ9BVI4 516 aaKnown RBP14.03□□□□□ -0.16
LIG1-217ENST00000599165 AGXT2Q9BYV1 514 aa14.03□□□□□ -0.16
LIG1-217ENST00000599165 PPP1R12CQ9BZL4 782 aa14.03□□□□□ -0.16
LIG1-217ENST00000599165 WNT8AQ9H1J5 351 aa14.03□□□□□ -0.16
LIG1-217ENST00000599165 TELO2Q9Y4R8 837 aa14.03□□□□□ -0.16
LIG1-217ENST00000599165 NID2Q14112 1375 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 KLF18A0A0U1RQI7 1052 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 ZBTB43O43298 467 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 CSF2RAP15509 400 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 UBA1P22314 1058 aaKnown RBP14.02□□□□□ -0.17
LIG1-217ENST00000599165 CYP2C18P33260 490 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 FPGSQ05932 587 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 MYSM1Q5VVJ2 828 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 WWC2Q6AWC2 1192 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 GPR153Q6NV75 609 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 Q7L0L9 218 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 FBXL16Q8N461 479 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 INPP4AQ96PE3 977 aaPredicted RBP14.02□□□□□ -0.17
LIG1-217ENST00000599165 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.02□□□□□ -0.179e-7■■■□□ 19.2
LIG1-217ENST00000599165 MRVI1Q9Y6F6 885 aa14.02□□□□□ -0.17
LIG1-217ENST00000599165 GBF1Q92538 1859 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 TLR3O15455 904 aaKnown RBP14.01□□□□□ -0.17
LIG1-217ENST00000599165 SORBS3O60504 671 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 CYP2C9P11712 490 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 RPS6KB1P23443 525 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 CCND2P30279 289 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 ICAM3P32942 547 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 APOBRQ0VD83 1088 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 UBE2SQ16763 222 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 RTN1Q16799 776 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 HSDL1Q3SXM5 330 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 CELF3Q5SZQ8 465 aaKnown RBP14.01□□□□□ -0.17
LIG1-217ENST00000599165 RASIP1Q5U651 963 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 ERICH6BQ5W0A0 696 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 Q6ZUG5 572 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 USP26Q9BXU7 913 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 SEZ6LQ9BYH1 1024 aa14.01□□□□□ -0.17
LIG1-217ENST00000599165 SEC63Q9UGP8 760 aaKnown RBP14.01□□□□□ -0.17
LIG1-217ENST00000599165 GOLGA8AA7E2F4 631 aa14□□□□□ -0.17
LIG1-217ENST00000599165 GOLGA8BA8MQT2 603 aa14□□□□□ -0.17
LIG1-217ENST00000599165 HAS3O00219 553 aa14□□□□□ -0.17
LIG1-217ENST00000599165 ADAMTS3O15072 1205 aa14□□□□□ -0.17
LIG1-217ENST00000599165 KPNA6O60684 536 aa14□□□□□ -0.17
LIG1-217ENST00000599165 REC8O95072 547 aa14□□□□□ -0.17
LIG1-217ENST00000599165 HMGB1P09429 215 aaKnown RBP14□□□□□ -0.17
LIG1-217ENST00000599165 ADD1P35611 737 aaKnown RBP14□□□□□ -0.17
LIG1-217ENST00000599165 RCAN1P53805 252 aa14□□□□□ -0.17
LIG1-217ENST00000599165 HIC1Q14526 733 aa14□□□□□ -0.17
LIG1-217ENST00000599165 TMEM240Q5SV17 173 aa14□□□□□ -0.17
LIG1-217ENST00000599165 PCNX4Q63HM2 1172 aa14□□□□□ -0.17
LIG1-217ENST00000599165 FAM109BQ6ICB4 259 aaPredicted RBP14□□□□□ -0.17
LIG1-217ENST00000599165 NFRKBQ6P4R8 1299 aa14□□□□□ -0.17
LIG1-217ENST00000599165 PPTC7Q8NI37 304 aa14□□□□□ -0.17
LIG1-217ENST00000599165 BRF1Q92994 677 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms