RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 RBM27Q9P2N5 1060 aaKnown RBP18.58■□□□□ 0.56
TRIM28-213ENST00000598355 A6NJR5 290 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 STAM2O75886 525 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 CABYRO75952 493 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 TXNP10599 105 aaKnown RBP18.57■□□□□ 0.56
TRIM28-213ENST00000598355 IFNAR1P17181 557 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 CCND2P30279 289 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 CDK7P50613 346 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 MRPS9P82933 396 aaKnown RBP18.57■□□□□ 0.56
TRIM28-213ENST00000598355 ARHGAP1Q07960 439 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 PKN1Q16512 942 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 PFKFB3Q16875 520 aaPredicted RBP18.57■□□□□ 0.56
TRIM28-213ENST00000598355 OR6J1Q8NGC5 347 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 COPS5Q92905 334 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 CUL5Q93034 780 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 TOX2Q96NM4 488 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 GDF15Q99988 308 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 RNF26Q9BY78 433 aaPredicted RBP18.57■□□□□ 0.56
TRIM28-213ENST00000598355 PSTPIP2Q9H939 334 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 PDLIM7Q9NR12 457 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 DDX41Q9UJV9 622 aaKnown RBP18.57■□□□□ 0.56
TRIM28-213ENST00000598355 ZMYND8Q9ULU4 1186 aaPredicted RBP18.57■□□□□ 0.56
TRIM28-213ENST00000598355 V9GY48 417 aaPredicted RBP18.57■□□□□ 0.56
TRIM28-213ENST00000598355 LAMA3Q16787 3333 aa18.57■□□□□ 0.56
TRIM28-213ENST00000598355 A0A0U1RQG5 324 aaPredicted RBP18.56■□□□□ 0.56
TRIM28-213ENST00000598355 ESYT2A0FGR8 921 aa18.56■□□□□ 0.56
TRIM28-213ENST00000598355 CPT1AP50416 773 aa18.56■□□□□ 0.56
TRIM28-213ENST00000598355 PURAQ00577 322 aaKnown RBP18.56■□□□□ 0.56
TRIM28-213ENST00000598355 PCNX4Q63HM2 1172 aa18.56■□□□□ 0.56
TRIM28-213ENST00000598355 XRRA1Q6P2D8 792 aa18.56■□□□□ 0.56
TRIM28-213ENST00000598355 CXCL17Q6UXB2 119 aa18.56■□□□□ 0.56
TRIM28-213ENST00000598355 SEPT14Q6ZU15 432 aa18.56■□□□□ 0.56
TRIM28-213ENST00000598355 SMARCC2Q8TAQ2 1214 aa18.56■□□□□ 0.56
TRIM28-213ENST00000598355 RIC8AQ9NPQ8 531 aa18.56■□□□□ 0.56
TRIM28-213ENST00000598355 PDRG1Q9NUG6 133 aa18.56■□□□□ 0.56
TRIM28-213ENST00000598355 NAP1L2Q9ULW6 460 aaPredicted RBP18.56■□□□□ 0.56
TRIM28-213ENST00000598355 ATP11BQ9Y2G3 1177 aa18.56■□□□□ 0.56
TRIM28-213ENST00000598355 GRIN2DO15399 1336 aa18.55■□□□□ 0.56
TRIM28-213ENST00000598355 MROH7Q68CQ1 1323 aa18.55■□□□□ 0.56
TRIM28-213ENST00000598355 PRPF3O43395 683 aaKnown RBP18.55■□□□□ 0.56
TRIM28-213ENST00000598355 ZEB2O60315 1214 aa18.55■□□□□ 0.56
TRIM28-213ENST00000598355 TGFB3P10600 412 aa18.55■□□□□ 0.56
TRIM28-213ENST00000598355 HOXD8P13378 290 aaPredicted RBP18.55■□□□□ 0.56
TRIM28-213ENST00000598355 SCG2P13521 617 aa18.55■□□□□ 0.56
TRIM28-213ENST00000598355 ICAM3P32942 547 aa18.55■□□□□ 0.56
TRIM28-213ENST00000598355 CLK2P49760 499 aaKnown RBP18.55■□□□□ 0.56
TRIM28-213ENST00000598355 NAPAP54920 295 aa18.55■□□□□ 0.56
TRIM28-213ENST00000598355 TLE2Q04725 743 aa18.55■□□□□ 0.56
TRIM28-213ENST00000598355 LY6KQ17RY6 165 aa18.55■□□□□ 0.56
TRIM28-213ENST00000598355 KCNV1Q6PIU1 500 aa18.55■□□□□ 0.56
TRIM28-213ENST00000598355 NCOA5Q9HCD5 579 aaKnown RBP18.55■□□□□ 0.56
TRIM28-213ENST00000598355 POLR3EQ9NVU0 708 aa18.55■□□□□ 0.56
TRIM28-213ENST00000598355 COLQQ9Y215 455 aaPredicted RBP18.55■□□□□ 0.56
TRIM28-213ENST00000598355 ARVCFO00192 962 aa18.54■□□□□ 0.56
TRIM28-213ENST00000598355 GH1P01241 217 aa18.54■□□□□ 0.56
TRIM28-213ENST00000598355 MYCLP12524 364 aaPredicted RBP18.54■□□□□ 0.56
TRIM28-213ENST00000598355 SYN1P17600 705 aa18.54■□□□□ 0.56
TRIM28-213ENST00000598355 BMP8BP34820 402 aa18.54■□□□□ 0.56
TRIM28-213ENST00000598355 SEMA3FQ13275 785 aa18.54■□□□□ 0.56
TRIM28-213ENST00000598355 UBE2SQ16763 222 aa18.54■□□□□ 0.56
TRIM28-213ENST00000598355 CHRDL2Q6WN34 429 aa18.54■□□□□ 0.56
TRIM28-213ENST00000598355 SEZ6LQ9BYH1 1024 aa18.54■□□□□ 0.56
TRIM28-213ENST00000598355 MRVI1Q9Y6F6 885 aa18.54■□□□□ 0.56
TRIM28-213ENST00000598355 TANC1Q9C0D5 1861 aa18.54■□□□□ 0.56
TRIM28-213ENST00000598355 MMP3P08254 477 aa18.53■□□□□ 0.56
TRIM28-213ENST00000598355 UBA1P22314 1058 aaKnown RBP18.53■□□□□ 0.56
TRIM28-213ENST00000598355 MAGEA10P43363 369 aaPredicted RBP18.53■□□□□ 0.56
TRIM28-213ENST00000598355 CCT2P78371 535 aaKnown RBP18.53■□□□□ 0.56
TRIM28-213ENST00000598355 FAM126BQ8IXS8 530 aa18.53■□□□□ 0.56
TRIM28-213ENST00000598355 PHKBQ93100 1093 aa18.53■□□□□ 0.56
TRIM28-213ENST00000598355 ZMYND12Q9H0C1 365 aa18.53■□□□□ 0.56
TRIM28-213ENST00000598355 GLT8D2Q9H1C3 349 aa18.53■□□□□ 0.56
TRIM28-213ENST00000598355 A0A1W2PPC1 479 aa18.52■□□□□ 0.56
TRIM28-213ENST00000598355 KIAA0355O15063 1070 aa18.52■□□□□ 0.56
TRIM28-213ENST00000598355 KPNA6O60684 536 aa18.52■□□□□ 0.56
TRIM28-213ENST00000598355 CD4P01730 458 aa18.52■□□□□ 0.56
TRIM28-213ENST00000598355 CLTBP09497 229 aa18.52■□□□□ 0.56
TRIM28-213ENST00000598355 ADCY7P51828 1080 aa18.52■□□□□ 0.56
TRIM28-213ENST00000598355 FAAP100Q0VG06 881 aa18.52■□□□□ 0.56
TRIM28-213ENST00000598355 AP3B2Q13367 1082 aa18.52■□□□□ 0.56
TRIM28-213ENST00000598355 GNPTABQ3T906 1256 aa18.52■□□□□ 0.56
TRIM28-213ENST00000598355 PPTC7Q8NI37 304 aa18.52■□□□□ 0.56
TRIM28-213ENST00000598355 TBX21Q9UL17 535 aa18.52■□□□□ 0.56
TRIM28-213ENST00000598355 TRIM43BA6NCK2 446 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 SPDYE3A6NKU9 549 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 SPATA31C2B4DYI2 1134 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 FIBPO43427 364 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 PQBP1O60828 265 aaKnown RBP18.51■□□□□ 0.55
TRIM28-213ENST00000598355 AK2P54819 239 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 SP2Q02086 613 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 ITGA7Q13683 1181 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 BRDTQ58F21 947 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-213ENST00000598355 HABP4Q5JVS0 413 aaKnown RBP18.51■□□□□ 0.55
TRIM28-213ENST00000598355 CELF3Q5SZQ8 465 aaKnown RBP18.51■□□□□ 0.55
TRIM28-213ENST00000598355 MYSM1Q5VVJ2 828 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 SH3RF1Q7Z6J0 888 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 AFG1LQ8WV93 481 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 CRYGNQ8WXF5 182 aa18.51■□□□□ 0.55
TRIM28-213ENST00000598355 TRIM43Q96BQ3 446 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-213ENST00000598355 MTG1Q9BT17 334 aaPredicted RBP18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms