RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 COG5Q9UP83 839 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 REV3LO60673 3130 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 NEDD4P46934 1319 aa14.62□□□□□ -0.07
TRIM28-212ENST00000597995 TRIP12Q14669 1992 aaPredicted RBP14.62□□□□□ -0.07
TRIM28-212ENST00000597995 BDP1A6H8Y1 2624 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 SELPP16109 830 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 KCNJ6P48051 423 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 SKIV2LQ15477 1246 aaKnown RBP14.61□□□□□ -0.07
TRIM28-212ENST00000597995 DGKDQ16760 1214 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 LY6KQ17RY6 165 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 GDF6Q6KF10 455 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-212ENST00000597995 CWC27Q6UX04 472 aaKnown RBP14.61□□□□□ -0.07
TRIM28-212ENST00000597995 SEPT14Q6ZU15 432 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 KAT2BQ92831 832 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 EMID1Q96A84 441 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-212ENST00000597995 CTAGE1Q96RT6 745 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 RMDN3Q96TC7 470 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 CPVLQ9H3G5 476 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 CERS4Q9HA82 394 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 COL20A1Q9P218 1284 aa14.61□□□□□ -0.07
TRIM28-212ENST00000597995 MRPL11Q9Y3B7 192 aaKnown RBP14.61□□□□□ -0.07
TRIM28-212ENST00000597995 EPOPA6NHQ4 379 aa14.6□□□□□ -0.07
TRIM28-212ENST00000597995 TLL1O43897 1013 aa14.6□□□□□ -0.07
TRIM28-212ENST00000597995 KDM4AO75164 1064 aa14.6□□□□□ -0.07
TRIM28-212ENST00000597995 EIF3JO75822 258 aaKnown RBP14.6□□□□□ -0.07
TRIM28-212ENST00000597995 CHMP4BP1P59074 171 aa14.6□□□□□ -0.07
TRIM28-212ENST00000597995 TFF2Q03403 129 aa14.6□□□□□ -0.07
TRIM28-212ENST00000597995 GPNMBQ14956 572 aa14.6□□□□□ -0.07
TRIM28-212ENST00000597995 FBXO11Q86XK2 927 aa14.6□□□□□ -0.07
TRIM28-212ENST00000597995 ARNTL2Q8WYA1 636 aa14.6□□□□□ -0.07
TRIM28-212ENST00000597995 ZSCAN10Q96SZ4 725 aaPredicted RBP14.6□□□□□ -0.07
TRIM28-212ENST00000597995 KATNAL1Q9BW62 490 aa14.6□□□□□ -0.07
TRIM28-212ENST00000597995 GTF2IRD1Q9UHL9 959 aa14.6□□□□□ -0.07
TRIM28-212ENST00000597995 DDX41Q9UJV9 622 aaKnown RBP14.6□□□□□ -0.07
TRIM28-212ENST00000597995 TCF20Q9UGU0 1960 aaKnown RBP14.6□□□□□ -0.07
TRIM28-212ENST00000597995 ABHD14A-ACY1A0A1B0GW23 586 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 ARHGEF15O94989 841 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 CXCL10P02778 98 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 KCNQ1P51787 676 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 WDR5P61964 334 aaKnown RBP14.59□□□□□ -0.07
TRIM28-212ENST00000597995 LAMC2Q13753 1193 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 QRICH1Q2TAL8 776 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 TTC22Q5TAA0 569 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 ARHGEF16Q5VV41 709 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 CNKSR3Q6P9H4 555 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 LRRC8DQ7L1W4 858 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 DHX38Q92620 1227 aaKnown RBP14.59□□□□□ -0.07
TRIM28-212ENST00000597995 MAP3K20Q9NYL2 800 aaKnown RBP14.59□□□□□ -0.07
TRIM28-212ENST00000597995 LMCD1Q9NZU5 365 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 ZSWIM5Q9P217 1185 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 XIRP2A4UGR9 3374 aa14.59□□□□□ -0.07
TRIM28-212ENST00000597995 KIAA1217Q5T5P2 1943 aa14.58□□□□□ -0.07
TRIM28-212ENST00000597995 B4E1Z4 1266 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 HIP1O00291 1037 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 EFCAB14O75071 495 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 NR3C2P08235 984 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 PARP1P09874 1014 aaKnown RBP14.58□□□□□ -0.08
TRIM28-212ENST00000597995 CKBP12277 381 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 GHRHRQ02643 423 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 PTK7Q13308 1070 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 GRB10Q13322 594 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 CHST3Q7LGC8 479 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 SAMD3Q8N6K7 520 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 C7orf31Q8N865 590 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 ENAHQ8N8S7 591 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-212ENST00000597995 PPTC7Q8NI37 304 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 NECAB3Q96P71 396 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-212ENST00000597995 DSCC1Q9BVC3 393 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 C1QTNF1Q9BXJ1 281 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 KRT23Q9C075 422 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 JMJD4Q9H9V9 463 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 PXMP2Q9NR77 195 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 DIAPH3Q9NSV4 1193 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 HDAC6Q9UBN7 1215 aa14.58□□□□□ -0.08
TRIM28-212ENST00000597995 HAS3O00219 553 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 DHX16O60231 1041 aaKnown RBP14.57□□□□□ -0.08
TRIM28-212ENST00000597995 LPXNO60711 386 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 F2P00734 622 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 HOXD8P13378 290 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-212ENST00000597995 PSEN2P49810 448 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 HSD17B4P51659 736 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 IMMTQ16891 758 aaKnown RBP14.57□□□□□ -0.08
TRIM28-212ENST00000597995 KRT40Q6A162 431 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 KCNV1Q6PIU1 500 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 DHX37Q8IY37 1157 aaKnown RBP14.57□□□□□ -0.08
TRIM28-212ENST00000597995 HLA-CQ95604 372 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 RAD9AQ99638 391 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 ZBED2Q9BTP6 218 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 AMNQ9BXJ7 453 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 CNNM2Q9H8M5 875 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 VAT1LQ9HCJ6 419 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 CTNNA3Q9UI47 895 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 MRVI1Q9Y6F6 885 aa14.57□□□□□ -0.08
TRIM28-212ENST00000597995 NBNO60934 754 aa14.56□□□□□ -0.08
TRIM28-212ENST00000597995 PPFIA4O75335 1185 aa14.56□□□□□ -0.08
TRIM28-212ENST00000597995 GJB5O95377 273 aa14.56□□□□□ -0.08
TRIM28-212ENST00000597995 CFBP00751 764 aa14.56□□□□□ -0.08
TRIM28-212ENST00000597995 EIF2AK2P19525 551 aaKnown RBP14.56□□□□□ -0.08
TRIM28-212ENST00000597995 IKBKEQ14164 716 aa14.56□□□□□ -0.08
TRIM28-212ENST00000597995 MFSD10Q14728 455 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms