RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 PHLDB2Q86SQ0 1253 aa13.72□□□□□ -0.21
USHBP1-207ENST00000597928 SH2D3CQ8N5H7 860 aa13.72□□□□□ -0.21
USHBP1-207ENST00000597928 EHBP1Q8NDI1 1231 aa13.72□□□□□ -0.21
USHBP1-207ENST00000597928 DPH5Q9H2P9 285 aa13.72□□□□□ -0.21
USHBP1-207ENST00000597928 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.72□□□□□ -0.21
USHBP1-207ENST00000597928 CAPN6Q9Y6Q1 641 aa13.72□□□□□ -0.21
USHBP1-207ENST00000597928 ZSCAN5CA6NGD5 496 aaPredicted RBP13.72□□□□□ -0.21
USHBP1-207ENST00000597928 SF3B3Q15393 1217 aaKnown RBP13.72□□□□□ -0.21
USHBP1-207ENST00000597928 CCDC84Q86UT8 332 aaPredicted RBP13.72□□□□□ -0.21
USHBP1-207ENST00000597928 EPB41L5Q9HCM4 733 aa13.72□□□□□ -0.21
USHBP1-207ENST00000597928 LIMA1Q9UHB6 759 aaKnown RBP13.72□□□□□ -0.21
USHBP1-207ENST00000597928 TNS2Q63HR2 1409 aa13.72□□□□□ -0.21
USHBP1-207ENST00000597928 SPATA31A1Q5TZJ5 1347 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 GOLGA6L10A6NI86 522 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 EEF1GP26641 437 aaKnown RBP13.71□□□□□ -0.21
USHBP1-207ENST00000597928 GJC1P36383 396 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 GRM4Q14833 912 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 NAALADL2Q58DX5 795 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 FAM76AQ8TAV0 307 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 EHD4Q9H223 541 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 LUC7LQ9NQ29 371 aaKnown RBP13.71□□□□□ -0.21
USHBP1-207ENST00000597928 SLIT3O75094 1523 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 ORC4O43929 436 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 ECM2O94769 699 aaPredicted RBP13.71□□□□□ -0.21
USHBP1-207ENST00000597928 LIG3P49916 1009 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 HERVK_113P62684 666 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 SLC9C1Q4G0N8 1177 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 SFMBT2Q5VUG0 894 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 KCNK18Q7Z418 384 aa13.71□□□□□ -0.21
USHBP1-207ENST00000597928 LRRN2O75325 713 aa13.71□□□□□ -0.22
USHBP1-207ENST00000597928 RPS6KA4O75676 772 aa13.71□□□□□ -0.22
USHBP1-207ENST00000597928 ZBED6P86452 979 aa13.71□□□□□ -0.22
USHBP1-207ENST00000597928 IFFO1Q0D2I5 559 aa13.71□□□□□ -0.22
USHBP1-207ENST00000597928 GRAPQ13588 217 aa13.71□□□□□ -0.22
USHBP1-207ENST00000597928 CLEC4GQ6UXB4 293 aa13.71□□□□□ -0.22
USHBP1-207ENST00000597928 SLF2Q8IX21 1173 aa13.71□□□□□ -0.22
USHBP1-207ENST00000597928 CCDC65Q8IXS2 484 aa13.71□□□□□ -0.22
USHBP1-207ENST00000597928 GRAPLQ8TC17 118 aaPredicted RBP13.71□□□□□ -0.22
USHBP1-207ENST00000597928 NFU1Q9UMS0 254 aa13.71□□□□□ -0.22
USHBP1-207ENST00000597928 TCP10L2B9ZVM9 353 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 NR2F2P24468 414 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 CYP2C19P33261 490 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 NPY5RQ15761 445 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 E2F4Q16254 413 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 VWA3BQ502W6 1294 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 U2AF1L4Q8WU68 220 aaKnown RBP13.7□□□□□ -0.22
USHBP1-207ENST00000597928 UBLCP1Q8WVY7 318 aaPredicted RBP13.7□□□□□ -0.22
USHBP1-207ENST00000597928 CUL5Q93034 780 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 NOX5Q96PH1 765 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 KCNQ5Q9NR82 932 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 SERPINB13Q9UIV8 391 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 KRT13P13646 458 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 CFAP58Q5T655 872 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 ARL6IP4Q66PJ3 421 aaKnown RBP13.7□□□□□ -0.22
USHBP1-207ENST00000597928 CCDC25Q86WR0 208 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 IRF2BP1Q8IU81 584 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 ADGRF4Q8IZF3 695 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 MYCT1Q8N699 235 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 RBM17Q96I25 401 aaKnown RBP13.7□□□□□ -0.22
USHBP1-207ENST00000597928 DMGDHQ9UI17 866 aaKnown RBP13.7□□□□□ -0.22
USHBP1-207ENST00000597928 LCMT1Q9UIC8 334 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 ELMO3Q96BJ8 720 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 SELENOOQ9BVL4 669 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 IKZF4Q9H2S9 585 aa13.7□□□□□ -0.22
USHBP1-207ENST00000597928 CETN3O15182 167 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 VAV2P52735 878 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 GNGT1P63211 74 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 IRX5P78411 483 aaPredicted RBP13.69□□□□□ -0.22
USHBP1-207ENST00000597928 NFIAQ12857 509 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 CTTNQ14247 550 aaKnown RBP13.69□□□□□ -0.22
USHBP1-207ENST00000597928 ASIC2Q16515 512 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 BEND6Q5SZJ8 279 aaPredicted RBP13.69□□□□□ -0.22
USHBP1-207ENST00000597928 TMED8Q6PL24 325 aaPredicted RBP13.69□□□□□ -0.22
USHBP1-207ENST00000597928 DHTKD1Q96HY7 919 aaPredicted RBP13.69□□□□□ -0.22
USHBP1-207ENST00000597928 SEMA6BQ9H3T3 888 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 PPANQ9NQ55 473 aaKnown RBP13.69□□□□□ -0.22
USHBP1-207ENST00000597928 ANAPC4Q9UJX5 808 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.69□□□□□ -0.22
USHBP1-207ENST00000597928 LMO7Q8WWI1 1683 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 FLT1P17948 1338 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 ARHGAP25P42331 645 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 MIGA2Q7L4E1 593 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 CTNNBL1Q8WYA6 563 aaPredicted RBP13.69□□□□□ -0.22
USHBP1-207ENST00000597928 PCIF1Q9H4Z3 704 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 RGL1Q9NZL6 768 aa13.69□□□□□ -0.22
USHBP1-207ENST00000597928 SHTN1A0MZ66 631 aa13.68□□□□□ -0.22
USHBP1-207ENST00000597928 PDE2AO00408 941 aaPredicted RBP13.68□□□□□ -0.22
USHBP1-207ENST00000597928 PALMO75781 387 aa13.68□□□□□ -0.22
USHBP1-207ENST00000597928 FAM13AO94988 1023 aa13.68□□□□□ -0.22
USHBP1-207ENST00000597928 ZRANB2O95218 330 aaKnown RBP eCLIP13.68□□□□□ -0.22
USHBP1-207ENST00000597928 PLCG2P16885 1265 aa13.68□□□□□ -0.22
USHBP1-207ENST00000597928 NT5DC1Q5TFE4 455 aa13.68□□□□□ -0.22
USHBP1-207ENST00000597928 SLFN13Q68D06 897 aa13.68□□□□□ -0.22
USHBP1-207ENST00000597928 GJB7Q6PEY0 223 aa13.68□□□□□ -0.22
USHBP1-207ENST00000597928 RSRC2Q7L4I2 434 aaKnown RBP13.68□□□□□ -0.22
USHBP1-207ENST00000597928 BCAS4Q8TDM0 211 aa13.68□□□□□ -0.22
USHBP1-207ENST00000597928 CDCA7Q9BWT1 371 aaPredicted RBP13.68□□□□□ -0.22
USHBP1-207ENST00000597928 BHMT2Q9H2M3 363 aa13.68□□□□□ -0.22
USHBP1-207ENST00000597928 REXO2Q9Y3B8 237 aaKnown RBP13.68□□□□□ -0.22
USHBP1-207ENST00000597928 KIAA0754O94854 1291 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms