RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 PGM5Q15124 567 aa17.43■□□□□ 0.38
LIG1-215ENST00000597901 RNPC3Q96LT9 517 aaKnown RBP17.43■□□□□ 0.38
LIG1-215ENST00000597901 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.43■□□□□ 0.389e-10■■■□□ 18.4
LIG1-215ENST00000597901 HIPK3Q9H422 1215 aa17.43■□□□□ 0.38
LIG1-215ENST00000597901 SZT2Q5T011 3432 aa17.43■□□□□ 0.38
LIG1-215ENST00000597901 SUPT20HL2P0C7V6 817 aa17.42■□□□□ 0.38
LIG1-215ENST00000597901 ACRP10323 421 aa17.42■□□□□ 0.38
LIG1-215ENST00000597901 SMAD3P84022 425 aaKnown RBP17.42■□□□□ 0.38
LIG1-215ENST00000597901 LAMC2Q13753 1193 aa17.42■□□□□ 0.38
LIG1-215ENST00000597901 TMEM240Q5SV17 173 aa17.42■□□□□ 0.38
LIG1-215ENST00000597901 ZNF697Q5TEC3 545 aa17.42■□□□□ 0.38
LIG1-215ENST00000597901 DHX32Q7L7V1 743 aaKnown RBP17.42■□□□□ 0.38
LIG1-215ENST00000597901 SGMS1Q86VZ5 419 aa17.42■□□□□ 0.38
LIG1-215ENST00000597901 RAB11FIP4Q86YS3 637 aa17.42■□□□□ 0.38
LIG1-215ENST00000597901 PPP1R13LQ8WUF5 828 aa17.42■□□□□ 0.38
LIG1-215ENST00000597901 ZFP91Q96JP5 570 aaPredicted RBP17.42■□□□□ 0.38
LIG1-215ENST00000597901 NOC4LQ9BVI4 516 aaKnown RBP17.42■□□□□ 0.38
LIG1-215ENST00000597901 TRMT13Q9NUP7 481 aaKnown RBP17.42■□□□□ 0.38
LIG1-215ENST00000597901 STXBP5LQ9Y2K9 1186 aa17.42■□□□□ 0.38
LIG1-215ENST00000597901 MRVI1Q9Y6F6 885 aa17.42■□□□□ 0.38
LIG1-215ENST00000597901 UMODL1Q5DID0 1318 aa17.42■□□□□ 0.38
LIG1-215ENST00000597901 MMP3P08254 477 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 CASTP20810 708 aaKnown RBP17.41■□□□□ 0.38
LIG1-215ENST00000597901 CCND2P30279 289 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 CCL23P55773 120 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 PTPN11Q06124 597 aaPredicted RBP17.41■□□□□ 0.38
LIG1-215ENST00000597901 ADCK5Q3MIX3 580 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 FAM47CQ5HY64 1035 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 NFRKBQ6P4R8 1299 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 KCNV1Q6PIU1 500 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 SYNE3Q6ZMZ3 975 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 ZNF365Q70YC5 407 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 DHX37Q8IY37 1157 aaKnown RBP17.41■□□□□ 0.38
LIG1-215ENST00000597901 CCDC82Q8N4S0 544 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 IL31RAQ8NI17 732 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 EMID1Q96A84 441 aaPredicted RBP17.41■□□□□ 0.38
LIG1-215ENST00000597901 IL23AQ9NPF7 189 aa17.41■□□□□ 0.38
LIG1-215ENST00000597901 SEC63Q9UGP8 760 aaKnown RBP17.41■□□□□ 0.38
LIG1-215ENST00000597901 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.4■□□□□ 0.38
LIG1-215ENST00000597901 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.4■□□□□ 0.38
LIG1-215ENST00000597901 TGFB3P10600 412 aa17.4■□□□□ 0.38
LIG1-215ENST00000597901 CYP2C9P11712 490 aa17.4■□□□□ 0.38
LIG1-215ENST00000597901 CHMP4BP1P59074 171 aa17.4■□□□□ 0.38
LIG1-215ENST00000597901 SP2Q02086 613 aa17.4■□□□□ 0.38
LIG1-215ENST00000597901 KRT32Q14532 448 aa17.4■□□□□ 0.38
LIG1-215ENST00000597901 MYSM1Q5VVJ2 828 aa17.4■□□□□ 0.38
LIG1-215ENST00000597901 USP17L6PQ6QN14 398 aa17.4■□□□□ 0.38
LIG1-215ENST00000597901 KAT2BQ92831 832 aa17.4■□□□□ 0.38
LIG1-215ENST00000597901 LRRC37A2A6NM11 1700 aa17.4■□□□□ 0.38
LIG1-215ENST00000597901 LTBP2Q14767 1821 aa17.4■□□□□ 0.38
LIG1-215ENST00000597901 MEIS2O14770 477 aa17.39■□□□□ 0.37
LIG1-215ENST00000597901 FGBP02675 491 aa17.39■□□□□ 0.37
LIG1-215ENST00000597901 DGKDQ16760 1214 aa17.39■□□□□ 0.37
LIG1-215ENST00000597901 CELF3Q5SZQ8 465 aaKnown RBP17.39■□□□□ 0.37
LIG1-215ENST00000597901 KCNB2Q92953 911 aa17.39■□□□□ 0.37
LIG1-215ENST00000597901 CUL5Q93034 780 aa17.39■□□□□ 0.37
LIG1-215ENST00000597901 TCEANC2Q96MN5 208 aa17.39■□□□□ 0.37
LIG1-215ENST00000597901 FAM161BQ96MY7 647 aa17.39■□□□□ 0.37
LIG1-215ENST00000597901 WNT8AQ9H1J5 351 aa17.39■□□□□ 0.37
LIG1-215ENST00000597901 SEMA6BQ9H3T3 888 aa17.39■□□□□ 0.37
LIG1-215ENST00000597901 BRPF3Q9ULD4 1205 aa17.39■□□□□ 0.37
LIG1-215ENST00000597901 LAMA3Q16787 3333 aa17.39■□□□□ 0.37
LIG1-215ENST00000597901 hCG_1642624A0A1W2PR95 340 aa17.38■□□□□ 0.37
LIG1-215ENST00000597901 PIK3CDO00329 1044 aa17.38■□□□□ 0.37
LIG1-215ENST00000597901 PPFIA4O75335 1185 aa17.38■□□□□ 0.37
LIG1-215ENST00000597901 MRPS9P82933 396 aaKnown RBP17.38■□□□□ 0.37
LIG1-215ENST00000597901 RASIP1Q5U651 963 aa17.38■□□□□ 0.37
LIG1-215ENST00000597901 PSRC1Q6PGN9 363 aaPredicted RBP17.38■□□□□ 0.37
LIG1-215ENST00000597901 TMTC3Q6ZXV5 915 aa17.38■□□□□ 0.37
LIG1-215ENST00000597901 RPUSD2Q8IZ73 545 aaKnown RBP17.38■□□□□ 0.37
LIG1-215ENST00000597901 SMARCC2Q8TAQ2 1214 aa17.38■□□□□ 0.37
LIG1-215ENST00000597901 GPKOWQ92917 476 aaPredicted RBP eCLIP17.38■□□□□ 0.37
LIG1-215ENST00000597901 PSTPIP2Q9H939 334 aa17.38■□□□□ 0.37
LIG1-215ENST00000597901 RTEL1Q9NZ71 1219 aa17.38■□□□□ 0.37
LIG1-215ENST00000597901 SORBS3O60504 671 aa17.37■□□□□ 0.37
LIG1-215ENST00000597901 GGPS1O95749 300 aa17.37■□□□□ 0.37
LIG1-215ENST00000597901 HMGB1P09429 215 aaKnown RBP17.37■□□□□ 0.37
LIG1-215ENST00000597901 APOA5Q6Q788 366 aa17.37■□□□□ 0.37
LIG1-215ENST00000597901 MICU3Q86XE3 530 aa17.37■□□□□ 0.37
LIG1-215ENST00000597901 PPTC7Q8NI37 304 aa17.37■□□□□ 0.37
LIG1-215ENST00000597901 HERVK_113Q902F9 699 aa17.37■□□□□ 0.37
LIG1-215ENST00000597901 SCLYQ96I15 445 aa17.37■□□□□ 0.37
LIG1-215ENST00000597901 SPATA33Q96N06 139 aa17.37■□□□□ 0.37
LIG1-215ENST00000597901 BCAS3Q9H6U6 928 aa17.37■□□□□ 0.37
LIG1-215ENST00000597901 MLXIPQ9HAP2 919 aa17.37■□□□□ 0.37
LIG1-215ENST00000597901 SPATA31C2B4DYI2 1134 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 ZBTB43O43298 467 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 STAM2O75886 525 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 NEFLP07196 543 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 ICAM3P32942 547 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 HSPA4P34932 840 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 PTGISQ16647 500 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 HSDL1Q3SXM5 330 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 SESTD1Q86VW0 696 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 RETREG2Q8NC44 543 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 VWCEQ96DN2 955 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 GUCD1Q96NT3 240 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 RBM28Q9NW13 759 aaKnown RBP17.36■□□□□ 0.37
LIG1-215ENST00000597901 FRMPD4Q14CM0 1322 aa17.36■□□□□ 0.37
LIG1-215ENST00000597901 GRXCR1A8MXD5 290 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms