RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TEX11Q8IYF3 940 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 RBM12Q9NTZ6 932 aaKnown RBP16.89■□□□□ 0.29
UPF1-204ENST00000596842 EHHADHQ08426 723 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 PTF1AQ7RTS3 328 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 CREG2Q8IUH2 290 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 LARP4BQ92615 738 aaKnown RBP16.89■□□□□ 0.29
UPF1-204ENST00000596842 ARL8AQ96BM9 186 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 NCAPGQ9BPX3 1015 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 MKRN1Q9UHC7 482 aaKnown RBP16.89■□□□□ 0.29
UPF1-204ENST00000596842 FAM184BQ9ULE4 1060 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 NOP2P46087 812 aaKnown RBP16.88■□□□□ 0.29
UPF1-204ENST00000596842 TMEM266Q2M3C6 531 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 KRT25Q7Z3Z0 450 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 MAATS1Q7Z4T9 603 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 NOC3LQ8WTT2 800 aaKnown RBP16.88■□□□□ 0.29
UPF1-204ENST00000596842 CAPS2Q9BXY5 557 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 EPB41L5Q9HCM4 733 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 BCCIPQ9P287 314 aaKnown RBP eCLIP16.88■□□□□ 0.29
UPF1-204ENST00000596842 FRMD3A2A2Y4 597 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 PPFIA4O75335 1185 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 HPDP32754 393 aaPredicted RBP16.88■□□□□ 0.29
UPF1-204ENST00000596842 NFIXQ14938 502 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 CEP95Q96GE4 821 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 PLCD4Q9BRC7 762 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 AGPSO00116 658 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 EBAG9O00559 213 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 MPHOSPH10O00566 681 aaKnown RBP16.88■□□□□ 0.29
UPF1-204ENST00000596842 SLC16A2P36021 539 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 MEA1Q16626 185 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 KRT79Q5XKE5 535 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 TMED8Q6PL24 325 aaPredicted RBP16.88■□□□□ 0.29
UPF1-204ENST00000596842 LINC00116Q8NCU8 138 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 DDX12PQ92771 950 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 TSGA10Q9BZW7 698 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 HYOU1Q9Y4L1 999 aa16.88■□□□□ 0.29
UPF1-204ENST00000596842 SLC37A4O43826 429 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 SPTY2D1Q68D10 685 aaPredicted RBP16.87■□□□□ 0.29
UPF1-204ENST00000596842 TSEN2Q8NCE0 465 aaKnown RBP16.87■□□□□ 0.29
UPF1-204ENST00000596842 MTMR8Q96EF0 704 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 RPGRIP1Q96KN7 1286 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 CCDC43Q96MW1 224 aaKnown RBP16.87■□□□□ 0.29
UPF1-204ENST00000596842 KRT12Q99456 494 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 SH2D4AQ9H788 454 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 COL4A1P02462 1669 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 SHTN1A0MZ66 631 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 BTDP43251 543 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 TSG101Q99816 390 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 LSM14BQ9BX40 385 aaKnown RBP16.87■□□□□ 0.29
UPF1-204ENST00000596842 TTYH3Q9C0H2 523 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 SLC24A3Q9HC58 644 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 ADAMTS1Q9UHI8 967 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 FGRP09769 529 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 TCERG1LQ5VWI1 586 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 SAMD1Q6SPF0 538 aaPredicted RBP16.87■□□□□ 0.29
UPF1-204ENST00000596842 KCNK18Q7Z418 384 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 PACS2Q86VP3 889 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 TBC1D5Q92609 795 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 ZNF622Q969S3 477 aaKnown RBP eCLIP16.87■□□□□ 0.29
UPF1-204ENST00000596842 DUOX1Q9NRD9 1551 aa16.87■□□□□ 0.29
UPF1-204ENST00000596842 PRPF6O94906 941 aaKnown RBP16.86■□□□□ 0.29
UPF1-204ENST00000596842 CDK8P49336 464 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 NOX5Q96PH1 765 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 DDX60Q8IY21 1712 aaKnown RBP16.86■□□□□ 0.29
UPF1-204ENST00000596842 CICQ96RK0 1608 aaPredicted RBP16.86■□□□□ 0.29
UPF1-204ENST00000596842 NPHP3-ACAD11A0A0J9YXS1 232 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 SLURP2P0DP57 97 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 RASA1P20936 1047 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 CARSP49589 748 aaKnown RBP16.86■□□□□ 0.29
UPF1-204ENST00000596842 SF3B3Q15393 1217 aaKnown RBP16.86■□□□□ 0.29
UPF1-204ENST00000596842 FAM98CQ17RN3 349 aaKnown RBP16.86■□□□□ 0.29
UPF1-204ENST00000596842 PRPF38AQ8NAV1 312 aaKnown RBP16.86■□□□□ 0.29
UPF1-204ENST00000596842 RETREG2Q8NC44 543 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 TMCO5BA8MYB1 307 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 NDUFAB1O14561 156 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 HEXIM1O94992 359 aaKnown RBP16.86■□□□□ 0.29
UPF1-204ENST00000596842 IRAK1P51617 712 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 TRADDQ15628 312 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 TPTE2Q6XPS3 522 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 FAM133AQ8N9E0 248 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 SH3GLB2Q9NR46 395 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 PLAGL2Q9UPG8 496 aa16.86■□□□□ 0.29
UPF1-204ENST00000596842 PALMO75781 387 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 NEBLO76041 1014 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 MAN2A1Q16706 1144 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 RPAINQ86UA6 219 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 MMTAG2Q9BU76 263 aaKnown RBP16.85■□□□□ 0.29
UPF1-204ENST00000596842 STIM2Q9P246 746 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 FLT1P17948 1338 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 KIAA0753Q2KHM9 967 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 CFAP58Q5T655 872 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 ANKRD2Q9GZV1 360 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 ANO9A1A5B4 782 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 GRB10Q13322 594 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 HERC4Q5GLZ8 1057 aaPredicted RBP16.85■□□□□ 0.29
UPF1-204ENST00000596842 CEP83Q9Y592 693 aa16.85■□□□□ 0.29
UPF1-204ENST00000596842 FNBP4Q8N3X1 1017 aaPredicted RBP16.84■□□□□ 0.29
UPF1-204ENST00000596842 VIPAS39Q9H9C1 493 aa16.84■□□□□ 0.29
UPF1-204ENST00000596842 TARSL2A2RTX5 802 aaKnown RBP16.84■□□□□ 0.29
UPF1-204ENST00000596842 FAM153BP0C7A2 387 aa16.84■□□□□ 0.29
UPF1-204ENST00000596842 MAGEA9P43362 315 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms