RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 DDX41Q9UJV9 622 aaKnown RBP17.63■□□□□ 0.41
TRIM28-203ENST00000593582 BAZ2BQ9UIF8 2168 aaKnown RBP17.62■□□□□ 0.41
TRIM28-203ENST00000593582 CCND2P30279 289 aa17.62■□□□□ 0.41
TRIM28-203ENST00000593582 ERICH6BQ5W0A0 696 aa17.62■□□□□ 0.41
TRIM28-203ENST00000593582 KCNV1Q6PIU1 500 aa17.62■□□□□ 0.41
TRIM28-203ENST00000593582 APOA5Q6Q788 366 aa17.62■□□□□ 0.41
TRIM28-203ENST00000593582 TMTC3Q6ZXV5 915 aa17.62■□□□□ 0.41
TRIM28-203ENST00000593582 CCDC82Q8N4S0 544 aa17.62■□□□□ 0.41
TRIM28-203ENST00000593582 AFG1LQ8WV93 481 aa17.62■□□□□ 0.41
TRIM28-203ENST00000593582 CUL5Q93034 780 aa17.62■□□□□ 0.41
TRIM28-203ENST00000593582 TRPV6Q9H1D0 765 aa17.62■□□□□ 0.41
TRIM28-203ENST00000593582 RBM28Q9NW13 759 aaKnown RBP17.62■□□□□ 0.41
TRIM28-203ENST00000593582 PPP4R2Q9NY27 417 aa17.62■□□□□ 0.41
TRIM28-203ENST00000593582 ZBTB43O43298 467 aa17.61■□□□□ 0.41
TRIM28-203ENST00000593582 B4GALT4O60513 344 aa17.61■□□□□ 0.41
TRIM28-203ENST00000593582 HSPA4P34932 840 aa17.61■□□□□ 0.41
TRIM28-203ENST00000593582 ARHGAP1Q07960 439 aa17.61■□□□□ 0.41
TRIM28-203ENST00000593582 LAMC2Q13753 1193 aa17.61■□□□□ 0.41
TRIM28-203ENST00000593582 C9orf50Q5SZB4 431 aa17.61■□□□□ 0.41
TRIM28-203ENST00000593582 TMEM199Q8N511 208 aa17.61■□□□□ 0.41
TRIM28-203ENST00000593582 SMARCC2Q8TAQ2 1214 aa17.61■□□□□ 0.41
TRIM28-203ENST00000593582 KCNB2Q92953 911 aa17.61■□□□□ 0.41
TRIM28-203ENST00000593582 PPP1R12CQ9BZL4 782 aa17.61■□□□□ 0.41
TRIM28-203ENST00000593582 ALDH8A1Q9H2A2 487 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-203ENST00000593582 PIK3CDO00329 1044 aa17.6■□□□□ 0.41
TRIM28-203ENST00000593582 MMP3P08254 477 aa17.6■□□□□ 0.41
TRIM28-203ENST00000593582 SUPT20HL2P0C7V6 817 aa17.6■□□□□ 0.41
TRIM28-203ENST00000593582 TGFB3P10600 412 aa17.6■□□□□ 0.41
TRIM28-203ENST00000593582 PPIGQ13427 754 aaKnown RBP eCLIP17.6■□□□□ 0.41
TRIM28-203ENST00000593582 RTN1Q16799 776 aa17.6■□□□□ 0.41
TRIM28-203ENST00000593582 FAM47CQ5HY64 1035 aa17.6■□□□□ 0.41
TRIM28-203ENST00000593582 IL31RAQ8NI17 732 aa17.6■□□□□ 0.41
TRIM28-203ENST00000593582 EMID1Q96A84 441 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-203ENST00000593582 JAKMIP1Q96N16 626 aaKnown RBP17.6■□□□□ 0.41
TRIM28-203ENST00000593582 HIPK3Q9H422 1215 aa17.6■□□□□ 0.41
TRIM28-203ENST00000593582 PSTPIP2Q9H939 334 aa17.6■□□□□ 0.41
TRIM28-203ENST00000593582 BRPF3Q9ULD4 1205 aa17.6■□□□□ 0.41
TRIM28-203ENST00000593582 KLF18A0A0U1RQI7 1052 aa17.59■□□□□ 0.41
TRIM28-203ENST00000593582 hCG_1642624A0A1W2PR95 340 aa17.59■□□□□ 0.41
TRIM28-203ENST00000593582 STAM2O75886 525 aa17.59■□□□□ 0.41
TRIM28-203ENST00000593582 RGS20O76081 388 aa17.59■□□□□ 0.41
TRIM28-203ENST00000593582 CENPBP07199 599 aaPredicted RBP17.59■□□□□ 0.41
TRIM28-203ENST00000593582 CASTP20810 708 aaKnown RBP17.59■□□□□ 0.41
TRIM28-203ENST00000593582 EPHB4P54760 987 aa17.59■□□□□ 0.41
TRIM28-203ENST00000593582 DGKDQ16760 1214 aa17.59■□□□□ 0.41
TRIM28-203ENST00000593582 NBPF20Q3BBV1 942 aa17.59■□□□□ 0.41
TRIM28-203ENST00000593582 NFRKBQ6P4R8 1299 aa17.59■□□□□ 0.41
TRIM28-203ENST00000593582 USP17L6PQ6QN14 398 aa17.59■□□□□ 0.41
TRIM28-203ENST00000593582 DHX37Q8IY37 1157 aaKnown RBP17.59■□□□□ 0.41
TRIM28-203ENST00000593582 RNPC3Q96LT9 517 aaKnown RBP17.59■□□□□ 0.41
TRIM28-203ENST00000593582 SNX14Q9Y5W7 946 aa17.59■□□□□ 0.41
TRIM28-203ENST00000593582 FRMPD4Q14CM0 1322 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 GOLGA8AA7E2F4 631 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 GOLGA8BA8MQT2 603 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 MEIS2O14770 477 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 CSF2RAP15509 400 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 PSMA5P28066 241 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 CYP2C18P33260 490 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 RCAN1P53805 252 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 CHMP4BP1P59074 171 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 GNPTABQ3T906 1256 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 BLOC1S2Q6QNY1 142 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 HEATR3Q7Z4Q2 680 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 PPTC7Q8NI37 304 aa17.58■□□□□ 0.4
TRIM28-203ENST00000593582 TRMT13Q9NUP7 481 aaKnown RBP17.58■□□□□ 0.4
TRIM28-203ENST00000593582 NAP1L2Q9ULW6 460 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-203ENST00000593582 EPB41L2O43491 1005 aaKnown RBP17.57■□□□□ 0.4
TRIM28-203ENST00000593582 CPA1P15085 419 aa17.57■□□□□ 0.4
TRIM28-203ENST00000593582 PTPN11Q06124 597 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-203ENST00000593582 CELF3Q5SZQ8 465 aaKnown RBP17.57■□□□□ 0.4
TRIM28-203ENST00000593582 MYSM1Q5VVJ2 828 aa17.57■□□□□ 0.4
TRIM28-203ENST00000593582 XRRA1Q6P2D8 792 aa17.57■□□□□ 0.4
TRIM28-203ENST00000593582 DEFB123Q8N688 67 aa17.57■□□□□ 0.4
TRIM28-203ENST00000593582 ZFP91Q96JP5 570 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-203ENST00000593582 NOC4LQ9BVI4 516 aaKnown RBP17.57■□□□□ 0.4
TRIM28-203ENST00000593582 CNTNAP5Q8WYK1 1306 aa17.56■□□□□ 0.4
TRIM28-203ENST00000593582 CCDC196A0A1B0GTZ2 297 aa17.56■□□□□ 0.4
TRIM28-203ENST00000593582 GGPS1O95749 300 aa17.56■□□□□ 0.4
TRIM28-203ENST00000593582 UBA1P22314 1058 aaKnown RBP17.56■□□□□ 0.4
TRIM28-203ENST00000593582 MRPS9P82933 396 aaKnown RBP17.56■□□□□ 0.4
TRIM28-203ENST00000593582 PCNX4Q63HM2 1172 aa17.56■□□□□ 0.4
TRIM28-203ENST00000593582 Q6ZUG5 572 aa17.56■□□□□ 0.4
TRIM28-203ENST00000593582 SPATA33Q96N06 139 aa17.56■□□□□ 0.4
TRIM28-203ENST00000593582 INPP4AQ96PE3 977 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-203ENST00000593582 KATNAL1Q9BW62 490 aa17.56■□□□□ 0.4
TRIM28-203ENST00000593582 MLXIPQ9HAP2 919 aa17.56■□□□□ 0.4
TRIM28-203ENST00000593582 KIAA1217Q5T5P2 1943 aa17.56■□□□□ 0.4
TRIM28-203ENST00000593582 SPDYE3A6NKU9 549 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 PPFIA4O75335 1185 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 CYP2C9P11712 490 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 RPS6KB1P23443 525 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 METAP2P50579 478 aaKnown RBP eCLIP17.55■□□□□ 0.47e-10■■■□□ 18.4
TRIM28-203ENST00000593582 CCL23P55773 120 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 SMAD3P84022 425 aaKnown RBP17.55■□□□□ 0.4
TRIM28-203ENST00000593582 SP2Q02086 613 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 FUT2Q10981 343 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 PSRC1Q6PGN9 363 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-203ENST00000593582 Q7L0L9 218 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 FBXL16Q8N461 479 aa17.55■□□□□ 0.4
TRIM28-203ENST00000593582 GPKOWQ92917 476 aaPredicted RBP eCLIP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms