RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 TSKSQ9UJT2 592 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 KLRF2D3W0D1 207 aa16.46■□□□□ 0.22
SMARCA4-219ENST00000592604 TSPY3P0CV98 308 aa16.46■□□□□ 0.22
SMARCA4-219ENST00000592604 TSPY8P0CW00 308 aa16.46■□□□□ 0.22
SMARCA4-219ENST00000592604 NAPAP54920 295 aa16.46■□□□□ 0.22
SMARCA4-219ENST00000592604 RPS8P62241 208 aaKnown RBP16.46■□□□□ 0.22
SMARCA4-219ENST00000592604 LRRC63Q05C16 580 aa16.46■□□□□ 0.22
SMARCA4-219ENST00000592604 KLHDC7AQ5VTJ3 777 aa16.46■□□□□ 0.22
SMARCA4-219ENST00000592604 SPTY2D1Q68D10 685 aaPredicted RBP16.46■□□□□ 0.22
SMARCA4-219ENST00000592604 RRAGAQ7L523 313 aa16.46■□□□□ 0.22
SMARCA4-219ENST00000592604 C6orf50Q9HD87 102 aa16.46■□□□□ 0.22
SMARCA4-219ENST00000592604 RBAK-RBAKDNI3L0D1 243 aa16.45■□□□□ 0.22
SMARCA4-219ENST00000592604 GRB10Q13322 594 aa16.45■□□□□ 0.22
SMARCA4-219ENST00000592604 SLC4A8Q2Y0W8 1093 aa16.45■□□□□ 0.22
SMARCA4-219ENST00000592604 PDXDC1Q6P996 788 aa16.45■□□□□ 0.22
SMARCA4-219ENST00000592604 BCAS4Q8TDM0 211 aa16.45■□□□□ 0.22
SMARCA4-219ENST00000592604 ANKRD2Q9GZV1 360 aa16.45■□□□□ 0.22
SMARCA4-219ENST00000592604 SMCO2A6NFE2 343 aa16.45■□□□□ 0.22
SMARCA4-219ENST00000592604 MYMKA6NI61 221 aa16.45■□□□□ 0.22
SMARCA4-219ENST00000592604 HSF2BPO75031 334 aa16.45■□□□□ 0.22
SMARCA4-219ENST00000592604 CXCR5P32302 372 aa16.45■□□□□ 0.22
SMARCA4-219ENST00000592604 MATR3P43243 847 aaKnown RBP eCLIP16.45■□□□□ 0.221e-6■■■■■ 30.1
SMARCA4-219ENST00000592604 ZNF444Q8N0Y2 327 aaPredicted RBP16.45■□□□□ 0.22
SMARCA4-219ENST00000592604 GNGT1P63211 74 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 TTMPQ5BVD1 217 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 HGSNATQ68CP4 663 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 C8orf74Q6P047 294 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 LRRC55Q6ZSA7 311 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 DZIP1Q86YF9 867 aaKnown RBP16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 ARL8AQ96BM9 186 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 MTMR8Q96EF0 704 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 NOX5Q96PH1 765 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 YY1AP1Q9H869 796 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 ROBO1Q9Y6N7 1651 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 SMARCA1P28370 1054 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 PNMA5Q96PV4 448 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 MTMR9Q96QG7 549 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 EHD4Q9H223 541 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 GDF3Q9NR23 364 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 RBM12Q9NTZ6 932 aaKnown RBP16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 SMARCAL1Q9NZC9 954 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 EHD2Q9NZN4 543 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 FAM169AQ9Y6X4 670 aa16.44■□□□□ 0.22
SMARCA4-219ENST00000592604 SHTN1A0MZ66 631 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 NCK2O43639 380 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 CFAP221Q4G0U5 840 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 GOLGA8HP0CJ92 632 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 FXR2P51116 673 aaKnown RBP eCLIP16.43■□□□□ 0.228e-7■■■■□ 20
SMARCA4-219ENST00000592604 HSPA2P54652 639 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 MRPS25P82663 173 aaKnown RBP16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 EHHADHQ08426 723 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 IFT20Q8IY31 132 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 IQCKQ8N0W5 287 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 TBCKQ8TEA7 893 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 LARP4BQ92615 738 aaKnown RBP16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 SYN2Q92777 582 aaPredicted RBP16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 RUFY1Q96T51 708 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 PSMB7Q99436 277 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 CDCA7Q9BWT1 371 aaPredicted RBP16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 STX8Q9UNK0 236 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 IRS2Q9Y4H2 1338 aa16.43■□□□□ 0.22
SMARCA4-219ENST00000592604 APBA1Q02410 837 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 RASSF7Q02833 373 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 GFPT1Q06210 699 aaPredicted RBP16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 PSMD2Q13200 908 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 SKIDA1Q1XH10 827 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 EMC10Q5UCC4 262 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 ZIM3Q96PE6 472 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 NUCKS1Q9H1E3 243 aaKnown RBP16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 RIC8AQ9NPQ8 531 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 RASA1P20936 1047 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 KCNMA1Q12791 1236 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 POTEDQ86YR6 584 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 SUGP1Q8IWZ8 645 aaKnown RBP16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 SH3RF3Q8TEJ3 882 aaPredicted RBP16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 ESYT2A0FGR8 921 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 SLC1A4P43007 532 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 PPP4CP60510 307 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 MREGQ8N565 214 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 ANKRD13CQ8N6S4 541 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 ACSBG1Q96GR2 724 aa16.42■□□□□ 0.22
SMARCA4-219ENST00000592604 RGL2O15211 777 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 TXKP42681 527 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 SOGA3Q5TF21 947 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 CACNA2D4Q7Z3S7 1137 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 TXNRD3Q86VQ6 643 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 EGFL6Q8IUX8 553 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 PROM2Q8N271 834 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 MICALL1Q8N3F8 863 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 BANK1Q8NDB2 785 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 CPVLQ9H3G5 476 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 MTMR7Q9Y216 660 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 GLI1P08151 1106 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 PDIA5Q14554 519 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 CD302Q8IX05 232 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 SLC44A5Q8NCS7 719 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 LRRC27Q9C0I9 530 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 CEP72Q9P209 647 aa16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 COL5A3P25940 1745 aaPredicted RBP16.41■□□□□ 0.22
SMARCA4-219ENST00000592604 ATXN2Q99700 1313 aaKnown RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms