RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 TSPY8P0CW00 308 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 ATP5JP18859 108 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 CASTP20810 708 aaKnown RBP13.03□□□□□ -0.32
ZNF540-209ENST00000590588 PDE4BQ07343 736 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 KCTD1Q719H9 257 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 NEDD1Q8NHV4 660 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 YME1L1Q96TA2 773 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 HAUS7Q99871 368 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 FAM86C1Q9NVL1 165 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 GTF2IRD1Q9UHL9 959 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 MYO15AQ9UKN7 3530 aa13.03□□□□□ -0.32
ZNF540-209ENST00000590588 MYH4Q9Y623 1939 aa13.02□□□□□ -0.32
ZNF540-209ENST00000590588 B4DLN1 442 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 MRPL12P52815 198 aaKnown RBP13.02□□□□□ -0.33
ZNF540-209ENST00000590588 ZXDAP98168 799 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 PTK7Q13308 1070 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 SMAD4Q13485 552 aaKnown RBP13.02□□□□□ -0.33
ZNF540-209ENST00000590588 CLUL1Q15846 466 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 PPP4R3BQ5MIZ7 849 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 ZNF618Q5T7W0 954 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 FBXO11Q86XK2 927 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 ITPRIPQ8IWB1 547 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 C7orf31Q8N865 590 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 CHMP4CQ96CF2 233 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 EMSYQ7Z589 1322 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 ZDBF2Q9HCK1 2354 aa13.02□□□□□ -0.33
ZNF540-209ENST00000590588 EDNRBP24530 442 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 CALML3P27482 149 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 TFAP4Q01664 338 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 DLX2Q07687 328 aaPredicted RBP13.01□□□□□ -0.33
ZNF540-209ENST00000590588 FTSJ3Q8IY81 847 aaKnown RBP13.01□□□□□ -0.33
ZNF540-209ENST00000590588 DBF4BQ8NFT6 615 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 DNERQ8NFT8 737 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 AFG1LQ8WV93 481 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 KAT2BQ92831 832 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 TOP1MTQ969P6 601 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 LMAN2LQ9H0V9 348 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 BCL11AQ9H165 835 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 HDAC6Q9UBN7 1215 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 CACNA1AO00555 2505 aa13.01□□□□□ -0.33
ZNF540-209ENST00000590588 ZFHX2Q9C0A1 2572 aaPredicted RBP13□□□□□ -0.33
ZNF540-209ENST00000590588 PROB1E7EW31 1015 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 NFIBO00712 420 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 ARIH2O95376 493 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 RB1P06400 928 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 MMP3P08254 477 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 AVPR2P30518 371 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 TDO2P48775 406 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 MKRN4PQ13434 485 aaPredicted RBP13□□□□□ -0.33
ZNF540-209ENST00000590588 MBTPS1Q14703 1052 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 TRAF7Q6Q0C0 670 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 RNF207Q6ZRF8 634 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 KATNAL1Q9BW62 490 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 RANBP17Q9H2T7 1088 aaKnown RBP13□□□□□ -0.33
ZNF540-209ENST00000590588 ALG13Q9NP73 1137 aaKnown RBP13□□□□□ -0.33
ZNF540-209ENST00000590588 CD207Q9UJ71 328 aa13□□□□□ -0.33
ZNF540-209ENST00000590588 U3KPZ7 1027 aaPredicted RBP13□□□□□ -0.33
ZNF540-209ENST00000590588 PTPRZ1P23471 2315 aaPredicted RBP12.99□□□□□ -0.33
ZNF540-209ENST00000590588 PLIN4Q96Q06 1357 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 UPP2O95045 317 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 GH1P01241 217 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 APPP05067 770 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 NUBP1P53384 320 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 SIGLEC14Q08ET2 396 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 HYAL1Q12794 435 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 DGKDQ16760 1214 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 TRIM71Q2Q1W2 868 aaKnown RBP12.99□□□□□ -0.33
ZNF540-209ENST00000590588 PLEKHG4Q58EX7 1191 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 CCDC62Q6P9F0 684 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 ALG1Q9BT22 464 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 PNMA2Q9UL42 364 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 STX8Q9UNK0 236 aa12.99□□□□□ -0.33
ZNF540-209ENST00000590588 RSPH10B2B2RC85 870 aa12.98□□□□□ -0.33
ZNF540-209ENST00000590588 C5orf67F2Z3F1 127 aa12.98□□□□□ -0.33
ZNF540-209ENST00000590588 EYA4O95677 639 aa12.98□□□□□ -0.33
ZNF540-209ENST00000590588 SLC3A2P08195 630 aaKnown RBP12.98□□□□□ -0.33
ZNF540-209ENST00000590588 RSPH10BP0C881 870 aa12.98□□□□□ -0.33
ZNF540-209ENST00000590588 GNAT2P19087 354 aa12.98□□□□□ -0.33
ZNF540-209ENST00000590588 PSEN2P49810 448 aa12.98□□□□□ -0.33
ZNF540-209ENST00000590588 RPS6P62753 249 aaKnown RBP12.98□□□□□ -0.33
ZNF540-209ENST00000590588 SLC30A10Q6XR72 485 aa12.98□□□□□ -0.33
ZNF540-209ENST00000590588 CLEC4DQ8WXI8 215 aa12.98□□□□□ -0.33
ZNF540-209ENST00000590588 C11orf84Q9BUA3 381 aaPredicted RBP12.98□□□□□ -0.33
ZNF540-209ENST00000590588 IGFLR1Q9H665 355 aa12.98□□□□□ -0.33
ZNF540-209ENST00000590588 LOC730098B7Z3J9 87 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 PATL2C9JE40 543 aaKnown RBP12.97□□□□□ -0.33
ZNF540-209ENST00000590588 H0Y858 1186 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 RAB11FIP3O75154 756 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 TBX10O75333 385 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 BMPR1AP36894 532 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 VCPP55072 806 aaKnown RBP12.97□□□□□ -0.33
ZNF540-209ENST00000590588 ARHGAP1Q07960 439 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 ADAM15Q13444 863 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 MFSD10Q14728 455 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 CBX2Q14781 532 aaPredicted RBP12.97□□□□□ -0.33
ZNF540-209ENST00000590588 LY6KQ17RY6 165 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 BTNL9Q6UXG8 535 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 CHST3Q7LGC8 479 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 FIBCD1Q8N539 461 aa12.97□□□□□ -0.33
ZNF540-209ENST00000590588 SEPT8Q92599 483 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms