RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 TRERF1Q96PN7 1200 aa22.31■■□□□ 1.16
TRIM47-204ENST00000587339 HOXC10Q9NYD6 342 aa22.31■■□□□ 1.16
TRIM47-204ENST00000587339 STK17AQ9UEE5 414 aa22.31■■□□□ 1.16
TRIM47-204ENST00000587339 PAPPA2Q9BXP8 1791 aa22.3■■□□□ 1.16
TRIM47-204ENST00000587339 PARP14Q460N5 1801 aa22.3■■□□□ 1.16
TRIM47-204ENST00000587339 IGLV3-22A0A075B6J6 115 aa22.3■■□□□ 1.16
TRIM47-204ENST00000587339 RPN1P04843 607 aaKnown RBP22.3■■□□□ 1.16
TRIM47-204ENST00000587339 OAZ1P54368 228 aa22.3■■□□□ 1.16
TRIM47-204ENST00000587339 PNMA5Q96PV4 448 aa22.3■■□□□ 1.16
TRIM47-204ENST00000587339 NUDT12Q9BQG2 462 aa22.3■■□□□ 1.16
TRIM47-204ENST00000587339 ELP3Q9H9T3 547 aa22.3■■□□□ 1.16
TRIM47-204ENST00000587339 RABGAP1Q9Y3P9 1069 aa22.3■■□□□ 1.16
TRIM47-204ENST00000587339 MSH4O15457 936 aa22.29■■□□□ 1.16
TRIM47-204ENST00000587339 PTMAP06454 111 aaKnown RBP22.29■■□□□ 1.16
TRIM47-204ENST00000587339 AMPD3Q01432 767 aa22.29■■□□□ 1.16
TRIM47-204ENST00000587339 PPATQ06203 517 aa22.29■■□□□ 1.16
TRIM47-204ENST00000587339 REPS2Q8NFH8 660 aa22.29■■□□□ 1.16
TRIM47-204ENST00000587339 OTOFQ9HC10 1997 aa22.29■■□□□ 1.16
TRIM47-204ENST00000587339 MYPNQ86TC9 1320 aa22.29■■□□□ 1.16
TRIM47-204ENST00000587339 CT47A1Q5JQC4 288 aaPredicted RBP22.29■■□□□ 1.16
TRIM47-204ENST00000587339 MOB2Q70IA6 237 aa22.29■■□□□ 1.16
TRIM47-204ENST00000587339 PLA2G4DQ86XP0 818 aa22.29■■□□□ 1.16
TRIM47-204ENST00000587339 ERO1BQ86YB8 467 aa22.29■■□□□ 1.16
TRIM47-204ENST00000587339 OTUD5Q96G74 571 aa22.29■■□□□ 1.16
TRIM47-204ENST00000587339 COL20A1Q9P218 1284 aa22.29■■□□□ 1.16
TRIM47-204ENST00000587339 KDM3AQ9Y4C1 1321 aa22.28■■□□□ 1.16
TRIM47-204ENST00000587339 CCT6AP40227 531 aaKnown RBP22.28■■□□□ 1.16
TRIM47-204ENST00000587339 ZNF75DP51815 510 aa22.28■■□□□ 1.16
TRIM47-204ENST00000587339 CEP55Q53EZ4 464 aa22.28■■□□□ 1.16
TRIM47-204ENST00000587339 HS1BP3Q53T59 392 aa22.28■■□□□ 1.16
TRIM47-204ENST00000587339 SNRNP48Q6IEG0 339 aaKnown RBP22.28■■□□□ 1.16
TRIM47-204ENST00000587339 LARP4BQ92615 738 aaKnown RBP22.28■■□□□ 1.16
TRIM47-204ENST00000587339 CLMNQ96JQ2 1002 aa22.28■■□□□ 1.16
TRIM47-204ENST00000587339 NT5C3AQ9H0P0 336 aa22.28■■□□□ 1.16
TRIM47-204ENST00000587339 ZNF214Q9UL59 606 aaPredicted RBP22.28■■□□□ 1.16
TRIM47-204ENST00000587339 IRF6O14896 467 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 ERCC5P28715 1186 aaPredicted RBP22.27■■□□□ 1.16
TRIM47-204ENST00000587339 RPS6P62753 249 aaKnown RBP22.27■■□□□ 1.16
TRIM47-204ENST00000587339 SPIRE1Q08AE8 756 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 SV2BQ7L1I2 683 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 SYTL5Q8TDW5 730 aaPredicted RBP22.27■■□□□ 1.16
TRIM47-204ENST00000587339 TRIM9Q9C026 710 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 RNF146Q9NTX7 359 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 BLOC1S4Q9NUP1 217 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 CLEC11AQ9Y240 323 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 RIPK3Q9Y572 518 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 RLFQ13129 1914 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 WDR90Q96KV7 1748 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 SPDYE16A6NNV3 312 aaPredicted RBP22.27■■□□□ 1.16
TRIM47-204ENST00000587339 DHX8Q14562 1220 aaKnown RBP22.27■■□□□ 1.16
TRIM47-204ENST00000587339 TMEM132BQ14DG7 1078 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 TMEM119Q4V9L6 283 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 HAUS3Q68CZ6 603 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 RNF207Q6ZRF8 634 aa22.27■■□□□ 1.16
TRIM47-204ENST00000587339 RPTORQ8N122 1335 aa22.26■■□□□ 1.15
TRIM47-204ENST00000587339 SPDYE5A6NIY4 337 aa22.26■■□□□ 1.15
TRIM47-204ENST00000587339 ATP2A1O14983 1001 aa22.26■■□□□ 1.15
TRIM47-204ENST00000587339 STAT3P40763 770 aa22.26■■□□□ 1.15
TRIM47-204ENST00000587339 SETQ01105 290 aaPredicted RBP22.26■■□□□ 1.15
TRIM47-204ENST00000587339 FMR1Q06787 632 aaKnown RBP eCLIP22.26■■□□□ 1.15
TRIM47-204ENST00000587339 HYIQ5T013 277 aa22.26■■□□□ 1.15
TRIM47-204ENST00000587339 TREML2Q5T2D2 321 aa22.26■■□□□ 1.15
TRIM47-204ENST00000587339 ZNF658Q5TYW1 1059 aaPredicted RBP22.26■■□□□ 1.15
TRIM47-204ENST00000587339 NSMFQ6X4W1 530 aa22.26■■□□□ 1.15
TRIM47-204ENST00000587339 ARMC9Q7Z3E5 817 aa22.26■■□□□ 1.15
TRIM47-204ENST00000587339 SMYD4Q8IYR2 804 aaPredicted RBP22.26■■□□□ 1.15
TRIM47-204ENST00000587339 TEX13BQ9BXU2 312 aa22.26■■□□□ 1.15
TRIM47-204ENST00000587339 SLC26A4O43511 780 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 SEMA3FQ13275 785 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 KCNB1Q14721 858 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 ECM1Q16610 540 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 NCAPH2Q6IBW4 605 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 ERMNQ8TAM6 284 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 ENOX1Q8TC92 643 aaKnown RBP22.25■■□□□ 1.15
TRIM47-204ENST00000587339 RAD54LQ92698 747 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 C7orf25Q9BPX7 421 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 STK24Q9Y6E0 443 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 MEIS1O00470 390 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 CXCL11O14625 94 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 CD44P16070 742 aaKnown RBP22.25■■□□□ 1.15
TRIM47-204ENST00000587339 KLHL10Q6JEL2 608 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 SLC30A10Q6XR72 485 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.25■■□□□ 1.15
TRIM47-204ENST00000587339 PROCA1Q8NCQ7 364 aaPredicted RBP22.25■■□□□ 1.15
TRIM47-204ENST00000587339 HSD3B7Q9H2F3 369 aa22.25■■□□□ 1.15
TRIM47-204ENST00000587339 A0A0G2JLL6 359 aaPredicted RBP22.24■■□□□ 1.15
TRIM47-204ENST00000587339 KLRC4O43908 158 aa22.24■■□□□ 1.15
TRIM47-204ENST00000587339 MCM6Q14566 821 aa22.24■■□□□ 1.15
TRIM47-204ENST00000587339 KMT5BQ4FZB7 885 aa22.24■■□□□ 1.15
TRIM47-204ENST00000587339 GADL1Q6ZQY3 521 aa22.24■■□□□ 1.15
TRIM47-204ENST00000587339 KCNK18Q7Z418 384 aa22.24■■□□□ 1.15
TRIM47-204ENST00000587339 PRRT2Q7Z6L0 340 aaPredicted RBP22.24■■□□□ 1.15
TRIM47-204ENST00000587339 CCDC47Q96A33 483 aaKnown RBP22.24■■□□□ 1.15
TRIM47-204ENST00000587339 MRFAP1L1Q96HT8 127 aa22.24■■□□□ 1.15
TRIM47-204ENST00000587339 ZFP91Q96JP5 570 aaPredicted RBP22.24■■□□□ 1.15
TRIM47-204ENST00000587339 MXRA8Q9BRK3 442 aa22.24■■□□□ 1.15
TRIM47-204ENST00000587339 FANCLQ9NW38 375 aa22.24■■□□□ 1.15
TRIM47-204ENST00000587339 VAV3Q9UKW4 847 aa22.24■■□□□ 1.15
TRIM47-204ENST00000587339 PPP1R3GB7ZBB8 358 aa22.23■■□□□ 1.15
TRIM47-204ENST00000587339 RHOBTB3O94955 611 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms