RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.99□□□□□ -1.29
LIG3-206ENST00000586058 FCHSD1Q86WN1 690 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 IQUBQ8NA54 791 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 SMCR8Q8TEV9 937 aaPredicted RBP6.99□□□□□ -1.29
LIG3-206ENST00000586058 LRRC27Q9C0I9 530 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 CSRNP2Q9H175 543 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 CUEDC2Q9H467 287 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 ACAD9Q9H845 621 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 RAVER2Q9HCJ3 691 aaKnown RBP6.99□□□□□ -1.29
LIG3-206ENST00000586058 RNF146Q9NTX7 359 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 FBXO28Q9NVF7 368 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 TMEM260Q9NX78 707 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 FZD1Q9UP38 647 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 AGTPBP1Q9UPW5 1226 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 PFASO15067 1338 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 MCM3APO60318 1980 aa6.99□□□□□ -1.29
LIG3-206ENST00000586058 A0A0G2JLL6 359 aaPredicted RBP6.98□□□□□ -1.29
LIG3-206ENST00000586058 GOLGA6L19H0YKK7 550 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 VWA5AO00534 786 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 TBX3O15119 743 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 SLC26A4O43511 780 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 CELF2O95319 508 aaKnown RBP6.98□□□□□ -1.29
LIG3-206ENST00000586058 ZBTB48P10074 688 aaPredicted RBP6.98□□□□□ -1.29
LIG3-206ENST00000586058 CETPP11597 493 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 HOXA13P31271 388 aaPredicted RBP6.98□□□□□ -1.29
LIG3-206ENST00000586058 TXKP42681 527 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 GTF2A2P52657 109 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 CCNA1P78396 465 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 AMPD3Q01432 767 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 EARS2Q5JPH6 523 aaKnown RBP6.98□□□□□ -1.29
LIG3-206ENST00000586058 KIAA1755Q5JYT7 1200 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 USP17L6PQ6QN14 398 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 SHC4Q6S5L8 630 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 CATSPERGQ6ZRH7 1159 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 PRRT2Q7Z6L0 340 aaPredicted RBP6.98□□□□□ -1.29
LIG3-206ENST00000586058 FMR1NBQ8N0W7 255 aaPredicted RBP6.98□□□□□ -1.29
LIG3-206ENST00000586058 PDILTQ8N807 584 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 CHST13Q8NET6 341 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 SYMPKQ92797 1274 aaKnown RBP6.98□□□□□ -1.29
LIG3-206ENST00000586058 SHISA4Q96DD7 197 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 ATG4CQ96DT6 458 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 CLIC6Q96NY7 704 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 TRERF1Q96PN7 1200 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 NT5C3AQ9H0P0 336 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 GOLPH3LQ9H4A5 285 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 GPBP1L1Q9HC44 474 aaPredicted RBP6.98□□□□□ -1.29
LIG3-206ENST00000586058 ANO10Q9NW15 660 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 RMND1Q9NWS8 449 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 LRWD1Q9UFC0 647 aa6.98□□□□□ -1.29
LIG3-206ENST00000586058 SPDYE16A6NNV3 312 aaPredicted RBP6.97□□□□□ -1.29
LIG3-206ENST00000586058 BECN2A8MW95 431 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 MEIS2O14770 477 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 IRF6O14896 467 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 ATP2A1O14983 1001 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 POLR2DO15514 142 aaKnown RBP6.97□□□□□ -1.29
LIG3-206ENST00000586058 TDP2O95551 362 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 SLC25A27O95847 323 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 MYL1P05976 194 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 CCND2P30279 289 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 STAT3P40763 770 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 HSD17B4P51659 736 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 TYRO3Q06418 890 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 POSTNQ15063 836 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 GNPTABQ3T906 1256 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 PRR16Q569H4 304 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 AXDND1Q5T1B0 1012 aaPredicted RBP6.97□□□□□ -1.29
LIG3-206ENST00000586058 ARHGEF16Q5VV41 709 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 RRAGBQ5VZM2 374 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 KRBA2Q6ZNG9 492 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 NLRX1Q86UT6 975 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 CABP7Q86V35 215 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 CKAP2LQ8IYA6 745 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 ANKRD35Q8N283 1001 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 SNX29Q8TEQ0 813 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 SMARCE1Q969G3 411 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 DHX58Q96C10 678 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 AGBL1Q96MI9 1066 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 CCDC43Q96MW1 224 aaKnown RBP6.97□□□□□ -1.29
LIG3-206ENST00000586058 PAGR1Q9BTK6 254 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 MFRPQ9BY79 579 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 GTPBP4Q9BZE4 634 aaKnown RBP6.97□□□□□ -1.29
LIG3-206ENST00000586058 WDR11Q9BZH6 1224 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 TTC12Q9H892 705 aaPredicted RBP6.97□□□□□ -1.29
LIG3-206ENST00000586058 GRPEL1Q9HAV7 217 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 DISC1Q9NRI5 854 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 STK17AQ9UEE5 414 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 ADD3Q9UEY8 706 aaKnown RBP6.97□□□□□ -1.29
LIG3-206ENST00000586058 PCDHA12Q9UN75 941 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 KCNH4Q9UQ05 1017 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 HPSEQ9Y251 543 aa6.97□□□□□ -1.29
LIG3-206ENST00000586058 CCL15-CCL14A0A0B4J2E2 113 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 FAM237AA0A1B0GTK4 181 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 POTECB2RU33 542 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 STAM2O75886 525 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 CYP3A4P08684 503 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 HOXA7P31268 230 aaPredicted RBP6.96□□□□□ -1.3
LIG3-206ENST00000586058 TECP42680 631 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 HERVK_113P62684 666 aa6.96□□□□□ -1.3
LIG3-206ENST00000586058 SNW1Q13573 536 aaKnown RBP6.96□□□□□ -1.3
LIG3-206ENST00000586058 DGKZQ13574 1117 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms