RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 FBXL19Q6PCT2 694 aa5.77□□□□□ -1.49
SMCHD1-209ENST00000583441 FAM196AQ6ZSG2 479 aa5.77□□□□□ -1.49
SMCHD1-209ENST00000583441 STK32CQ86UX6 486 aa5.77□□□□□ -1.49
SMCHD1-209ENST00000583441 GOLM1Q8NBJ4 401 aa5.77□□□□□ -1.49
SMCHD1-209ENST00000583441 NETO2Q8NC67 525 aa5.77□□□□□ -1.49
SMCHD1-209ENST00000583441 FGF10O15520 208 aaPredicted RBP5.76□□□□□ -1.49
SMCHD1-209ENST00000583441 F13A1P00488 732 aa5.76□□□□□ -1.49
SMCHD1-209ENST00000583441 ATF4P18848 351 aaPredicted RBP5.76□□□□□ -1.49
SMCHD1-209ENST00000583441 GARTP22102 1010 aa5.76□□□□□ -1.49
SMCHD1-209ENST00000583441 FAM160A1Q05DH4 1040 aa5.76□□□□□ -1.49
SMCHD1-209ENST00000583441 APOBRQ0VD83 1088 aa5.76□□□□□ -1.49
SMCHD1-209ENST00000583441 MPP2Q14168 576 aa5.76□□□□□ -1.49
SMCHD1-209ENST00000583441 PRR31Q5SQ13 230 aa5.76□□□□□ -1.49
SMCHD1-209ENST00000583441 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.76□□□□□ -1.49
SMCHD1-209ENST00000583441 POLR2BP30876 1174 aaKnown RBP5.75□□□□□ -1.49
SMCHD1-209ENST00000583441 CWF19L2Q2TBE0 894 aaKnown RBP5.75□□□□□ -1.49
SMCHD1-209ENST00000583441 KBTBD2Q8IY47 623 aa5.75□□□□□ -1.49
SMCHD1-209ENST00000583441 NKD1Q969G9 470 aa5.75□□□□□ -1.49
SMCHD1-209ENST00000583441 ADOQ96SZ5 270 aa5.75□□□□□ -1.49
SMCHD1-209ENST00000583441 PRR13Q9NZ81 148 aa5.75□□□□□ -1.49
SMCHD1-209ENST00000583441 B4GALT4O60513 344 aa5.74□□□□□ -1.49
SMCHD1-209ENST00000583441 FGRP09769 529 aa5.74□□□□□ -1.49
SMCHD1-209ENST00000583441 NOP2P46087 812 aaKnown RBP5.74□□□□□ -1.49
SMCHD1-209ENST00000583441 SOX9P48436 509 aa5.74□□□□□ -1.49
SMCHD1-209ENST00000583441 SOGA3Q5TF21 947 aa5.74□□□□□ -1.49
SMCHD1-209ENST00000583441 CD300LDQ6UXZ3 194 aa5.74□□□□□ -1.49
SMCHD1-209ENST00000583441 SLITRK4Q8IW52 837 aa5.74□□□□□ -1.49
SMCHD1-209ENST00000583441 LZTR1Q8N653 840 aa5.74□□□□□ -1.49
SMCHD1-209ENST00000583441 HIRIP3Q9BW71 556 aaPredicted RBP5.74□□□□□ -1.49
SMCHD1-209ENST00000583441 TMEM168Q9H0V1 697 aa5.74□□□□□ -1.49
SMCHD1-209ENST00000583441 PPP1R1BQ9UD71 204 aaPredicted RBP5.74□□□□□ -1.49
SMCHD1-209ENST00000583441 SSBP05455 408 aaKnown RBP eCLIP5.73□□□□□ -1.49
SMCHD1-209ENST00000583441 AUHQ13825 339 aaKnown RBP5.73□□□□□ -1.49
SMCHD1-209ENST00000583441 CCDC142Q17RM4 750 aa5.73□□□□□ -1.49
SMCHD1-209ENST00000583441 ETV3LQ6ZN32 361 aa5.73□□□□□ -1.49
SMCHD1-209ENST00000583441 GLCCI1Q86VQ1 547 aa5.73□□□□□ -1.49
SMCHD1-209ENST00000583441 MCF2L2Q86YR7 1114 aa5.73□□□□□ -1.49
SMCHD1-209ENST00000583441 MBD6Q96DN6 1003 aa5.73□□□□□ -1.49
SMCHD1-209ENST00000583441 PTCHD1Q96NR3 888 aa5.73□□□□□ -1.49
SMCHD1-209ENST00000583441 L2HGDHQ9H9P8 463 aa5.73□□□□□ -1.49
SMCHD1-209ENST00000583441 UBP1Q9NZI7 540 aa5.73□□□□□ -1.49
SMCHD1-209ENST00000583441 EFR3BQ9Y2G0 817 aa5.73□□□□□ -1.49
SMCHD1-209ENST00000583441 STK10O94804 968 aaKnown RBP5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 IMPDH2P12268 514 aa5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 GTF2F1P35269 517 aaKnown RBP eCLIP5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 NASPP49321 788 aaPredicted RBP5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 ZNF165P49910 485 aa5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 ITGA1P56199 1179 aa5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 DGCR2P98153 550 aa5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 PKN3Q6P5Z2 889 aa5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 REC114Q7Z4M0 266 aa5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 LDLRAD3Q86YD5 345 aa5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 REXO1Q8N1G1 1221 aaKnown RBP5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 SRRTQ9BXP5 876 aaKnown RBP5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 GMIPQ9P107 970 aa5.72□□□□□ -1.49
SMCHD1-209ENST00000583441 ZNF28P17035 718 aa5.71□□□□□ -1.5
SMCHD1-209ENST00000583441 CRKP46108 304 aa5.71□□□□□ -1.5
SMCHD1-209ENST00000583441 SEZ6Q53EL9 994 aa5.71□□□□□ -1.5
SMCHD1-209ENST00000583441 MRGPRGQ86SM5 289 aa5.71□□□□□ -1.5
SMCHD1-209ENST00000583441 ZC3H18Q86VM9 953 aaKnown RBP5.71□□□□□ -1.5
SMCHD1-209ENST00000583441 EXTL1Q92935 676 aa5.71□□□□□ -1.5
SMCHD1-209ENST00000583441 AGAP2Q99490 1192 aa5.71□□□□□ -1.5
SMCHD1-209ENST00000583441 GINM1Q9NU53 330 aa5.71□□□□□ -1.5
SMCHD1-209ENST00000583441 RWDD3Q9Y3V2 267 aa5.71□□□□□ -1.5
SMCHD1-209ENST00000583441 ADH4P08319 380 aa5.7□□□□□ -1.5
SMCHD1-209ENST00000583441 CCNFP41002 786 aa5.7□□□□□ -1.5
SMCHD1-209ENST00000583441 KRTAP10-11P60412 298 aa5.7□□□□□ -1.5
SMCHD1-209ENST00000583441 NBPF6Q5VWK0 638 aa5.7□□□□□ -1.5
SMCHD1-209ENST00000583441 CKAP2LQ8IYA6 745 aa5.7□□□□□ -1.5
SMCHD1-209ENST00000583441 FAM26EQ8N5C1 309 aa5.7□□□□□ -1.5
SMCHD1-209ENST00000583441 OR6P1Q8NGX9 317 aa5.7□□□□□ -1.5
SMCHD1-209ENST00000583441 CPLX3Q8WVH0 158 aa5.7□□□□□ -1.5
SMCHD1-209ENST00000583441 NBPF4Q96M43 638 aa5.7□□□□□ -1.5
SMCHD1-209ENST00000583441 MEGF9Q9H1U4 602 aa5.7□□□□□ -1.5
SMCHD1-209ENST00000583441 DMRT1Q9Y5R6 373 aa5.7□□□□□ -1.5
SMCHD1-209ENST00000583441 H0Y8X5 98 aa5.69□□□□□ -1.5
SMCHD1-209ENST00000583441 TLR3O15455 904 aaKnown RBP5.69□□□□□ -1.5
SMCHD1-209ENST00000583441 ERBB2P04626 1255 aa5.69□□□□□ -1.5
SMCHD1-209ENST00000583441 MCM4P33991 863 aa5.69□□□□□ -1.5
SMCHD1-209ENST00000583441 FBXO27Q8NI29 283 aa5.69□□□□□ -1.5
SMCHD1-209ENST00000583441 YTHDC1Q96MU7 727 aaKnown RBP5.69□□□□□ -1.5
SMCHD1-209ENST00000583441 FERD3LQ96RJ6 166 aa5.69□□□□□ -1.5
SMCHD1-209ENST00000583441 CRBNQ96SW2 442 aa5.69□□□□□ -1.5
SMCHD1-209ENST00000583441 IL13P35225 146 aa5.68□□□□□ -1.5
SMCHD1-209ENST00000583441 RBL2Q08999 1139 aa5.68□□□□□ -1.5
SMCHD1-209ENST00000583441 LRRFIP1Q32MZ4 808 aaKnown RBP5.68□□□□□ -1.5
SMCHD1-209ENST00000583441 TNNI3KQ59H18 835 aa5.68□□□□□ -1.5
SMCHD1-209ENST00000583441 EHMT1Q9H9B1 1298 aa5.68□□□□□ -1.5
SMCHD1-209ENST00000583441 FBLN5Q9UBX5 448 aa5.68□□□□□ -1.5
SMCHD1-209ENST00000583441 ZNRF3Q9ULT6 936 aa5.68□□□□□ -1.5
SMCHD1-209ENST00000583441 ZDHHC9Q9Y397 364 aa5.68□□□□□ -1.5
SMCHD1-209ENST00000583441 ATE1O95260 518 aa5.67□□□□□ -1.5
SMCHD1-209ENST00000583441 EIF6P56537 245 aaKnown RBP5.67□□□□□ -1.5
SMCHD1-209ENST00000583441 WWC2Q6AWC2 1192 aa5.67□□□□□ -1.5
SMCHD1-209ENST00000583441 OVOS1Q6IE37 1185 aa5.67□□□□□ -1.5
SMCHD1-209ENST00000583441 TMEM192Q8IY95 271 aa5.67□□□□□ -1.5
SMCHD1-209ENST00000583441 FCRL3Q96P31 734 aaPredicted RBP5.67□□□□□ -1.5
SMCHD1-209ENST00000583441 DNAJC2Q99543 621 aaKnown RBP5.67□□□□□ -1.5
SMCHD1-209ENST00000583441 BRMS1Q9HCU9 246 aa5.67□□□□□ -1.5
SMCHD1-209ENST00000583441 FOXS1O43638 330 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms