RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 GAKO14976 1311 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 MGAMO43451 1857 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 PEX10O60683 326 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 GCLCP48506 637 aaPredicted RBP12.12□□□□□ -0.47
SS18-221ENST00000582448 IDH3AP50213 366 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 MECOMQ03112 1051 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 PABPC4Q13310 644 aaKnown RBP eCLIP12.12□□□□□ -0.47
SS18-221ENST00000582448 RASGRF1Q13972 1273 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 RABEP1Q15276 862 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 C11orf91Q3C1V1 193 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 COX20Q5RI15 118 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.12□□□□□ -0.47
SS18-221ENST00000582448 TNFRSF25Q93038 417 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 DNAJC2Q99543 621 aaKnown RBP12.12□□□□□ -0.47
SS18-221ENST00000582448 UBE2OQ9C0C9 1292 aaKnown RBP12.12□□□□□ -0.47
SS18-221ENST00000582448 SAP130Q9H0E3 1048 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 ASCC2Q9H1I8 757 aaPredicted RBP12.12□□□□□ -0.47
SS18-221ENST00000582448 CXXC1Q9P0U4 656 aaPredicted RBP12.12□□□□□ -0.47
SS18-221ENST00000582448 GJD2Q9UKL4 321 aa12.12□□□□□ -0.47
SS18-221ENST00000582448 RANBP2P49792 3224 aaKnown RBP12.12□□□□□ -0.47
SS18-221ENST00000582448 MROH7-TTC4A0A0A0MT08 1334 aa12.11□□□□□ -0.47
SS18-221ENST00000582448 RAD50Q92878 1312 aa12.11□□□□□ -0.47
SS18-221ENST00000582448 RFX7Q2KHR2 1363 aa12.11□□□□□ -0.47
SS18-221ENST00000582448 ADARB2-AS1A8MUL3 147 aa12.11□□□□□ -0.47
SS18-221ENST00000582448 SGSM2O43147 1006 aa12.11□□□□□ -0.47
SS18-221ENST00000582448 COL8A1P27658 744 aa12.11□□□□□ -0.47
SS18-221ENST00000582448 IRX3P78415 501 aaPredicted RBP12.11□□□□□ -0.47
SS18-221ENST00000582448 CWC27Q6UX04 472 aaKnown RBP12.11□□□□□ -0.47
SS18-221ENST00000582448 BHMTQ93088 406 aa12.11□□□□□ -0.47
SS18-221ENST00000582448 HAUS7Q99871 368 aa12.11□□□□□ -0.47
SS18-221ENST00000582448 GSX2Q9BZM3 304 aa12.11□□□□□ -0.47
SS18-221ENST00000582448 OSBPL5Q9H0X9 879 aaPredicted RBP12.11□□□□□ -0.47
SS18-221ENST00000582448 GPR75-ASB3A0A0A6YYF3 556 aa12.1□□□□□ -0.47
SS18-221ENST00000582448 MICAL2O94851 1124 aa12.1□□□□□ -0.47
SS18-221ENST00000582448 CAP2P40123 477 aa12.1□□□□□ -0.47
SS18-221ENST00000582448 RHBDL3P58872 404 aa12.1□□□□□ -0.47
SS18-221ENST00000582448 ANAPC15P60006 121 aa12.1□□□□□ -0.47
SS18-221ENST00000582448 CCAR1Q8IX12 1150 aaKnown RBP12.1□□□□□ -0.47
SS18-221ENST00000582448 TDHQ8IZJ6 230 aa12.1□□□□□ -0.47
SS18-221ENST00000582448 TRIB2Q92519 343 aa12.1□□□□□ -0.47
SS18-221ENST00000582448 CLP1Q92989 425 aaKnown RBP12.1□□□□□ -0.47
SS18-221ENST00000582448 MKNK1Q9BUB5 465 aa12.1□□□□□ -0.47
SS18-221ENST00000582448 PAG1Q9NWQ8 432 aa12.1□□□□□ -0.47
SS18-221ENST00000582448 RAI14Q9P0K7 980 aa12.1□□□□□ -0.47
SS18-221ENST00000582448 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.1□□□□□ -0.47
SS18-221ENST00000582448 DOCK3Q8IZD9 2030 aa12.1□□□□□ -0.47
SS18-221ENST00000582448 LDHCP07864 332 aa12.09□□□□□ -0.47
SS18-221ENST00000582448 UQCRFS1P1P0C7P4 283 aa12.09□□□□□ -0.47
SS18-221ENST00000582448 RRP1BQ14684 758 aaKnown RBP12.09□□□□□ -0.47
SS18-221ENST00000582448 LRIT3Q3SXY7 679 aa12.09□□□□□ -0.47
SS18-221ENST00000582448 TEX11Q8IYF3 940 aa12.09□□□□□ -0.47
SS18-221ENST00000582448 IFT43Q96FT9 208 aa12.09□□□□□ -0.47
SS18-221ENST00000582448 P2RX7Q99572 595 aaKnown RBP12.09□□□□□ -0.47
SS18-221ENST00000582448 AS3MTQ9HBK9 375 aa12.09□□□□□ -0.47
SS18-221ENST00000582448 CWC22Q9HCG8 908 aaKnown RBP12.09□□□□□ -0.47
SS18-221ENST00000582448 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.09□□□□□ -0.473e-16■■■■■ 317.3
SS18-221ENST00000582448 MTMR10Q9NXD2 777 aa12.09□□□□□ -0.47
SS18-221ENST00000582448 TMOD4Q9NZQ9 345 aa12.09□□□□□ -0.47
SS18-221ENST00000582448 OGDHLQ9ULD0 1010 aa12.09□□□□□ -0.47
SS18-221ENST00000582448 STXBP5LQ9Y2K9 1186 aa12.09□□□□□ -0.47
SS18-221ENST00000582448 MYH13Q9UKX3 1938 aa12.09□□□□□ -0.47
SS18-221ENST00000582448 MYH2Q9UKX2 1941 aa12.08□□□□□ -0.48
SS18-221ENST00000582448 GOLIM4O00461 696 aa12.08□□□□□ -0.48
SS18-221ENST00000582448 ITGB2P05107 769 aa12.08□□□□□ -0.48
SS18-221ENST00000582448 HSP90AA1P07900 732 aaKnown RBP12.08□□□□□ -0.48
SS18-221ENST00000582448 GSTO1P78417 241 aa12.08□□□□□ -0.48
SS18-221ENST00000582448 TTF1Q15361 905 aaPredicted RBP12.08□□□□□ -0.48
SS18-221ENST00000582448 ZSCAN25Q6NSZ9 544 aa12.08□□□□□ -0.48
SS18-221ENST00000582448 KBTBD3Q8NAB2 608 aa12.08□□□□□ -0.48
SS18-221ENST00000582448 GPRC5AQ8NFJ5 357 aa12.08□□□□□ -0.48
SS18-221ENST00000582448 SNX21Q969T3 373 aa12.08□□□□□ -0.48
SS18-221ENST00000582448 ZNF512BQ96KM6 892 aaPredicted RBP12.08□□□□□ -0.48
SS18-221ENST00000582448 FAM161BQ96MY7 647 aa12.08□□□□□ -0.48
SS18-221ENST00000582448 PAGR1Q9BTK6 254 aa12.08□□□□□ -0.48
SS18-221ENST00000582448 STARD13Q9Y3M8 1113 aa12.08□□□□□ -0.48
SS18-221ENST00000582448 COL6A3P12111 3177 aa12.07□□□□□ -0.48
SS18-221ENST00000582448 OPLAHO14841 1288 aa12.07□□□□□ -0.48
SS18-221ENST00000582448 ZFYP08048 801 aaPredicted RBP12.07□□□□□ -0.48
SS18-221ENST00000582448 ZKSCAN1P17029 563 aaPredicted RBP12.07□□□□□ -0.48
SS18-221ENST00000582448 CCND3P30281 292 aaPredicted RBP12.07□□□□□ -0.48
SS18-221ENST00000582448 CACNB2Q08289 660 aaPredicted RBP12.07□□□□□ -0.48
SS18-221ENST00000582448 NMIQ13287 307 aaPredicted RBP12.07□□□□□ -0.48
SS18-221ENST00000582448 FAM26DQ5JW98 314 aa12.07□□□□□ -0.48
SS18-221ENST00000582448 PI16Q6UXB8 463 aa12.07□□□□□ -0.48
SS18-221ENST00000582448 ZNF384Q8TF68 577 aa12.07□□□□□ -0.48
SS18-221ENST00000582448 NSUN4Q96CB9 384 aaKnown RBP12.07□□□□□ -0.48
SS18-221ENST00000582448 NOL10Q9BSC4 688 aaKnown RBP12.07□□□□□ -0.48
SS18-221ENST00000582448 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.07□□□□□ -0.48
SS18-221ENST00000582448 TXNRD2Q9NNW7 524 aa12.07□□□□□ -0.48
SS18-221ENST00000582448 HMG20BQ9P0W2 317 aa12.07□□□□□ -0.48
SS18-221ENST00000582448 LRP2BPQ9P2M1 347 aa12.07□□□□□ -0.48
SS18-221ENST00000582448 USP20Q9Y2K6 914 aa12.07□□□□□ -0.48
SS18-221ENST00000582448 PFASO15067 1338 aa12.07□□□□□ -0.48
SS18-221ENST00000582448 ADH7P40394 386 aa12.06□□□□□ -0.48
SS18-221ENST00000582448 ARSDP51689 593 aa12.06□□□□□ -0.48
SS18-221ENST00000582448 BACE1P56817 501 aa12.06□□□□□ -0.48
SS18-221ENST00000582448 CCL14Q16627 93 aa12.06□□□□□ -0.48
SS18-221ENST00000582448 LRRC26Q2I0M4 334 aa12.06□□□□□ -0.48
SS18-221ENST00000582448 SPATA5Q8NB90 893 aa12.06□□□□□ -0.48
SS18-221ENST00000582448 SH3RF3Q8TEJ3 882 aaPredicted RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms