RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 RASSF7Q02833 373 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 NNTQ13423 1086 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 TUBB8Q3ZCM7 444 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 POTEDQ86YR6 584 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 GUF1Q8N442 669 aaKnown RBP13.51□□□□□ -0.25
SHMT1-208ENST00000582352 TBCKQ8TEA7 893 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 TSG101Q99816 390 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 TLR10Q9BXR5 811 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 EHD4Q9H223 541 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 PVALEFA0A1B0GWK0 134 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 BUB1O43683 1085 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 ERLIN2O94905 339 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 SLC1A4P43007 532 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 TMEM266Q2M3C6 531 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 TTMPQ5BVD1 217 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 PDXDC1Q6P996 788 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 BICDL1Q6ZP65 573 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 DYMQ7RTS9 669 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 IFT20Q8IY31 132 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 REXO1Q8N1G1 1221 aaKnown RBP13.51□□□□□ -0.25
SHMT1-208ENST00000582352 RNF10Q8N5U6 811 aaKnown RBP13.51□□□□□ -0.25
SHMT1-208ENST00000582352 LARP4BQ92615 738 aaKnown RBP13.51□□□□□ -0.25
SHMT1-208ENST00000582352 MTMR8Q96EF0 704 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 ANKRD2Q9GZV1 360 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 CPVLQ9H3G5 476 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 LUC7LQ9NQ29 371 aaKnown RBP13.51□□□□□ -0.25
SHMT1-208ENST00000582352 MYMKA6NI61 221 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 ERCC3P19447 782 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 RPS8P62241 208 aaKnown RBP13.5□□□□□ -0.25
SHMT1-208ENST00000582352 ATP2B2Q01814 1243 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 ORC2Q13416 577 aaPredicted RBP13.5□□□□□ -0.25
SHMT1-208ENST00000582352 TTC19Q6DKK2 380 aaPredicted RBP13.5□□□□□ -0.25
SHMT1-208ENST00000582352 SLC44A5Q8NCS7 719 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 BAP1Q92560 729 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 SALL4Q9UJQ4 1053 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 NAV1Q8NEY1 1877 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 ROBO1Q9Y6N7 1651 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 SSU72P8A0A1W2PR75 194 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 LIG3P49916 1009 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 PAK2Q13177 524 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 CALCRLQ16602 461 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 SH3RF3Q8TEJ3 882 aaPredicted RBP13.5□□□□□ -0.25
SHMT1-208ENST00000582352 ARL8AQ96BM9 186 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 RNF14Q9UBS8 474 aa13.5□□□□□ -0.25
SHMT1-208ENST00000582352 LDHBP07195 334 aaKnown RBP13.49□□□□□ -0.25
SHMT1-208ENST00000582352 SKOR1P84550 965 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 GRB10Q13322 594 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 SLC9C1Q4G0N8 1177 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 KLHDC7AQ5VTJ3 777 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 PLCD3Q8N3E9 789 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 ZIM3Q96PE6 472 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 RAB34Q9BZG1 259 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 EDEM3Q9BZQ6 932 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 ZNF287Q9HBT7 754 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 BLOC1S4Q9NUP1 217 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 NDUFAB1O14561 156 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 DNA2P51530 1060 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 APBA1Q02410 837 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 PDCLQ13371 301 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 DDB1Q16531 1140 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 LRRC55Q6ZSA7 311 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 MS4A14Q96JA4 679 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 NUCKS1Q9H1E3 243 aaKnown RBP13.49□□□□□ -0.25
SHMT1-208ENST00000582352 HEXIM1O94992 359 aaKnown RBP13.49□□□□□ -0.25
SHMT1-208ENST00000582352 BAG3O95817 575 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 ASTE1Q2TB18 679 aaPredicted RBP13.49□□□□□ -0.25
SHMT1-208ENST00000582352 CFAP58Q5T655 872 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 CCDC43Q96MW1 224 aaKnown RBP13.49□□□□□ -0.25
SHMT1-208ENST00000582352 NLRC4Q9NPP4 1024 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 BIN2Q9UBW5 565 aaPredicted RBP13.49□□□□□ -0.25
SHMT1-208ENST00000582352 NFU1Q9UMS0 254 aa13.49□□□□□ -0.25
SHMT1-208ENST00000582352 KRT14P02533 472 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 GUCY2DQ02846 1103 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 CCDC40Q4G0X9 1142 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 SFMBT2Q5VUG0 894 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 KCTD16Q68DU8 428 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 MMS22LQ6ZRQ5 1243 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 ARHGAP27Q6ZUM4 889 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 SH2D3CQ8N5H7 860 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 TGFBRAP1Q8WUH2 860 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 IFT81Q8WYA0 676 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 LRRC27Q9C0I9 530 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 RIC8AQ9NPQ8 531 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 CEP72Q9P209 647 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 RASA1P20936 1047 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 HOXA7P31268 230 aaPredicted RBP13.48□□□□□ -0.25
SHMT1-208ENST00000582352 INPP5BP32019 993 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 HGSNATQ68CP4 663 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 B4GALNT4Q76KP1 1039 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 TMC4Q7Z404 712 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 PROM2Q8N271 834 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 VAT1LQ9HCJ6 419 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 EPB41L5Q9HCM4 733 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 SAP30BPQ9UHR5 308 aaKnown RBP13.48□□□□□ -0.25
SHMT1-208ENST00000582352 SAMM50Q9Y512 469 aa13.48□□□□□ -0.25
SHMT1-208ENST00000582352 ESYT3A0FGR9 886 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 RBAK-RBAKDNI3L0D1 243 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 PALMO75781 387 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 SERPING1P05155 500 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 GLI1P08151 1106 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms