RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CCDC34Q96HJ3 373 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 UIMC1Q96RL1 719 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 EHMT1Q9H9B1 1298 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 DISC1Q9NRI5 854 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 HOMER2Q9NSB8 354 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 CCDC39Q9UFE4 941 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 MAN1B1Q9UKM7 699 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 PCDHA5Q9Y5H7 936 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 ZNFX1Q9P2E3 1918 aaKnown RBP11.87□□□□□ -0.51
SS18-217ENST00000580958 SPDYE5A6NIY4 337 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 CAVIN2O95810 425 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 CASP1P29466 404 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 CIITAP33076 1130 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 ZNF76P36508 570 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 HSD17B4P51659 736 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 UBXN2AP68543 259 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 PPATQ06203 517 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 PPIL2Q13356 520 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 IQCB1Q15051 598 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 DPCR1Q3MIW9 517 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 Q4G0T1 1027 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 PRR16Q569H4 304 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 TREML2Q5T2D2 321 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 RRAGBQ5VZM2 374 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 MAP1SQ66K74 1059 aaPredicted RBP11.86□□□□□ -0.51
SS18-217ENST00000580958 GADL1Q6ZQY3 521 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 LUZP1Q86V48 1076 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 ERO1BQ86YB8 467 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 MCF2L2Q86YR7 1114 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 STAMQ92783 540 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 SMARCE1Q969G3 411 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 TRERF1Q96PN7 1200 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 PLIN2Q99541 437 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 MMTAG2Q9BU76 263 aaKnown RBP11.86□□□□□ -0.51
SS18-217ENST00000580958 TTC12Q9H892 705 aaPredicted RBP11.86□□□□□ -0.51
SS18-217ENST00000580958 RRAGCQ9HB90 399 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 KCNMB3Q9NPA1 279 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 RNF146Q9NTX7 359 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 LRWD1Q9UFC0 647 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 PNMA2Q9UL42 364 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 ADAMTS5Q9UNA0 930 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 DOCK5Q9H7D0 1870 aa11.86□□□□□ -0.51
SS18-217ENST00000580958 A0A0G2JLL6 359 aaPredicted RBP11.85□□□□□ -0.51
SS18-217ENST00000580958 SPDYE16A6NNV3 312 aaPredicted RBP11.85□□□□□ -0.51
SS18-217ENST00000580958 FAM86B1E9PN63 330 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 TRAF5O00463 557 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 IRF6O14896 467 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 GTPBP6O43824 516 aaPredicted RBP11.85□□□□□ -0.51
SS18-217ENST00000580958 SMC2O95347 1197 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 FAM86B2P0C5J1 330 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 PLCG1P19174 1290 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 SARSP49591 514 aaKnown RBP11.85□□□□□ -0.51
SS18-217ENST00000580958 OAZ1P54368 228 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 GHRHRQ02643 423 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 FMR1Q06787 632 aaKnown RBP eCLIP11.85□□□□□ -0.51
SS18-217ENST00000580958 CCDC173Q0VFZ6 552 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 PDIA5Q14554 519 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 NAALADL2Q58DX5 795 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 SNRNP48Q6IEG0 339 aaKnown RBP11.85□□□□□ -0.51
SS18-217ENST00000580958 PRRT2Q7Z6L0 340 aaPredicted RBP11.85□□□□□ -0.51
SS18-217ENST00000580958 LRRC15Q8TF66 581 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 LENG9Q96B70 501 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 RAB34Q9BZG1 259 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 ZNF408Q9H9D4 720 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 COL20A1Q9P218 1284 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 PCDH10Q9P2E7 1040 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 LOXHD1Q8IVV2 1947 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 MYPNQ86TC9 1320 aa11.85□□□□□ -0.51
SS18-217ENST00000580958 CXCL11O14625 94 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 DPYDQ12882 1025 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 GRB10Q13322 594 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 TMEM132BQ14DG7 1078 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 NT5DC1Q5TFE4 455 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 SLC30A10Q6XR72 485 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 IFNLR1Q8IU57 520 aaPredicted RBP11.84□□□□□ -0.51
SS18-217ENST00000580958 DHX40Q8IX18 779 aaKnown RBP11.84□□□□□ -0.51
SS18-217ENST00000580958 SLFN12Q8IYM2 578 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 AOPEPQ8N6M6 819 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 CYP2W1Q8TAV3 490 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 ETNPPLQ8TBG4 499 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 SYTL5Q8TDW5 730 aaPredicted RBP11.84□□□□□ -0.51
SS18-217ENST00000580958 SNX29Q8TEQ0 813 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 CALML4Q96GE6 196 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 PNMA5Q96PV4 448 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 MTRQ99707 1265 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 NAT10Q9H0A0 1025 aaKnown RBP11.84□□□□□ -0.51
SS18-217ENST00000580958 BLZF1Q9H2G9 400 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 HOXC10Q9NYD6 342 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 PCDHA12Q9UN75 941 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 KCNH4Q9UQ05 1017 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 RIPK3Q9Y572 518 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 RPTORQ8N122 1335 aa11.84□□□□□ -0.51
SS18-217ENST00000580958 IGLV3-22A0A075B6J6 115 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 TBX3O15119 743 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 MSH4O15457 936 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 BMP6P22004 513 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 STAT3P40763 770 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 RPS6P62753 249 aaKnown RBP11.83□□□□□ -0.52
SS18-217ENST00000580958 CUL4BQ13620 913 aa11.83□□□□□ -0.52
SS18-217ENST00000580958 MORC3Q14149 939 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms