RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 DDX60LQ5H9U9 1706 aaKnown RBP11.67□□□□□ -0.54
TOP3A-209ENST00000580095 BICDL2A1A5D9 508 aa11.67□□□□□ -0.54
TOP3A-209ENST00000580095 CCDC151A5D8V7 595 aa11.67□□□□□ -0.54
TOP3A-209ENST00000580095 G3V3G9 751 aa11.67□□□□□ -0.54
TOP3A-209ENST00000580095 SHMT1P34896 483 aa11.67□□□□□ -0.54
TOP3A-209ENST00000580095 DNA2P51530 1060 aa11.67□□□□□ -0.54
TOP3A-209ENST00000580095 AMPD3Q01432 767 aa11.67□□□□□ -0.54
TOP3A-209ENST00000580095 GABPAQ06546 454 aa11.67□□□□□ -0.54
TOP3A-209ENST00000580095 DCAF8Q5TAQ9 597 aa11.67□□□□□ -0.54
TOP3A-209ENST00000580095 CNNM4Q6P4Q7 775 aa11.67□□□□□ -0.54
TOP3A-209ENST00000580095 C15orf52Q6ZUT6 534 aaKnown RBP11.67□□□□□ -0.54
TOP3A-209ENST00000580095 HAS1Q92839 578 aa11.67□□□□□ -0.54
TOP3A-209ENST00000580095 JADE2Q9NQC1 790 aa11.67□□□□□ -0.54
TOP3A-209ENST00000580095 GEMIN8Q9NWZ8 242 aaKnown RBP11.67□□□□□ -0.54
TOP3A-209ENST00000580095 DDX25Q9UHL0 483 aaKnown RBP11.67□□□□□ -0.54
TOP3A-209ENST00000580095 E9PMD0 336 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 TULP2O00295 520 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 POLRMTO00411 1230 aaKnown RBP11.66□□□□□ -0.54
TOP3A-209ENST00000580095 CXCR5P32302 372 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 RBM5P52756 815 aaKnown RBP eCLIP11.66□□□□□ -0.54
TOP3A-209ENST00000580095 ZNF543Q08ER8 600 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 MSL1Q68DK7 614 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 CDC42EP5Q6NZY7 148 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 SLC30A10Q6XR72 485 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 RRAGAQ7L523 313 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 ZNF622Q969S3 477 aaKnown RBP eCLIP11.66□□□□□ -0.54
TOP3A-209ENST00000580095 NLRC4Q9NPP4 1024 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 SBF2Q86WG5 1849 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 PDE2AO00408 941 aaPredicted RBP11.66□□□□□ -0.54
TOP3A-209ENST00000580095 ONECUT3O60422 494 aaPredicted RBP11.66□□□□□ -0.54
TOP3A-209ENST00000580095 TTLL1O95922 423 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 MYL1P05976 194 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 ZBED6P86452 979 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 KCTD19Q17RG1 926 aaPredicted RBP11.66□□□□□ -0.54
TOP3A-209ENST00000580095 TMEM266Q2M3C6 531 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 FKBP15Q5T1M5 1219 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 KRT79Q5XKE5 535 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 TMC4Q7Z404 712 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 ZSCAN29Q8IWY8 852 aaPredicted RBP11.66□□□□□ -0.54
TOP3A-209ENST00000580095 FAM163AQ96GL9 167 aaPredicted RBP11.66□□□□□ -0.54
TOP3A-209ENST00000580095 CCDC42Q96M95 316 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 NDST4Q9H3R1 872 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 CUEDC2Q9H467 287 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 EHD2Q9NZN4 543 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 COL24A1Q17RW2 1714 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 IPO7O95373 1038 aaKnown RBP11.66□□□□□ -0.54
TOP3A-209ENST00000580095 MATR3P43243 847 aaKnown RBP eCLIP11.66□□□□□ -0.54
TOP3A-209ENST00000580095 ARID5AQ03989 594 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 SLF2Q8IX21 1173 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 TBC1D22AQ8WUA7 517 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 RAD54LQ92698 747 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 PLEKHA4Q9H4M7 779 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 HAUS4Q9H6D7 363 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 PSTPIP2Q9H939 334 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 ARHGAP20Q9P2F6 1191 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 SAR1BQ9Y6B6 198 aa11.66□□□□□ -0.54
TOP3A-209ENST00000580095 AFF2P51816 1311 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 POTEB3A0JP26 581 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 POTECB2RU33 542 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 EIF4A3P38919 411 aaKnown RBP11.65□□□□□ -0.54
TOP3A-209ENST00000580095 MEA1Q16626 185 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 WHAMMP3Q1A5X7 153 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 VWA3BQ502W6 1294 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 CENPPQ6IPU0 288 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 POTEBQ6S5H4 581 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 TRAPPC11Q7Z392 1133 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 CAGE1Q8TC20 777 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 BCAS3Q9H6U6 928 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 KIAA1024Q9UPX6 916 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 CAPN6Q9Y6Q1 641 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 NAV1Q8NEY1 1877 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 PNMA6FA0A0J9YX94 578 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 LRRC53A6NM62 1247 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 MEIS1O00470 390 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 MOCS3O95396 460 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 BRD3Q15059 726 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 USH1GQ495M9 461 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 ASPRV1Q53RT3 343 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 UNC13DQ70J99 1090 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 DEF6Q9H4E7 631 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 DNAJC18Q9H819 358 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 VPS18Q9P253 973 aa11.65□□□□□ -0.54
TOP3A-209ENST00000580095 LRRIQ3A6PVS8 624 aaPredicted RBP11.64□□□□□ -0.55
TOP3A-209ENST00000580095 TRAF5O00463 557 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 NCK2O43639 380 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 KRT86O43790 486 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 GDF11O95390 407 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 CYLC1P35663 651 aaPredicted RBP11.64□□□□□ -0.55
TOP3A-209ENST00000580095 C2orf54Q08AI8 447 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 GRIPAP1Q4V328 841 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 APOBEC3HQ6NTF7 200 aaKnown RBP11.64□□□□□ -0.55
TOP3A-209ENST00000580095 MSANTD4Q8NCY6 345 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 CCDC102AQ96A19 550 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 UBXN6Q9BZV1 441 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.64□□□□□ -0.55
TOP3A-209ENST00000580095 PCDHA12Q9UN75 941 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 L1RE1Q9UN81 338 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 MAST2Q6P0Q8 1798 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 PSMD14O00487 310 aa11.64□□□□□ -0.55
TOP3A-209ENST00000580095 CYP2C19P33261 490 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms