RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CASTP20810 708 aaKnown RBP27.55■■■□□ 2
SHMT1-206ENST00000579558 RPS6KB1P23443 525 aa27.55■■■□□ 2
SHMT1-206ENST00000579558 CCND2P30279 289 aa27.55■■■□□ 2
SHMT1-206ENST00000579558 VSIG10LQ86VR7 867 aa27.55■■■□□ 2
SHMT1-206ENST00000579558 TDHQ8IZJ6 230 aa27.55■■■□□ 2
SHMT1-206ENST00000579558 SMARCC2Q8TAQ2 1214 aa27.55■■■□□ 2
SHMT1-206ENST00000579558 BADQ92934 168 aa27.55■■■□□ 2
SHMT1-206ENST00000579558 BRF1Q92994 677 aa27.55■■■□□ 2
SHMT1-206ENST00000579558 USP26Q9BXU7 913 aa27.55■■■□□ 2
SHMT1-206ENST00000579558 MRVI1Q9Y6F6 885 aa27.55■■■□□ 2
SHMT1-206ENST00000579558 TLR3O15455 904 aaKnown RBP27.54■■■□□ 2
SHMT1-206ENST00000579558 GH1P01241 217 aa27.54■■■□□ 2
SHMT1-206ENST00000579558 RAG1P15918 1043 aa27.54■■■□□ 2
SHMT1-206ENST00000579558 RCAN1P53805 252 aa27.54■■■□□ 2
SHMT1-206ENST00000579558 PSMC6P62333 389 aa27.54■■■□□ 2
SHMT1-206ENST00000579558 PURAQ00577 322 aaKnown RBP27.54■■■□□ 2
SHMT1-206ENST00000579558 APOBRQ0VD83 1088 aa27.54■■■□□ 2
SHMT1-206ENST00000579558 FAM126BQ8IXS8 530 aa27.54■■■□□ 2
SHMT1-206ENST00000579558 SLC43A3Q8NBI5 491 aa27.54■■■□□ 2
SHMT1-206ENST00000579558 GRIN2DO15399 1336 aa27.53■■■□□ 2
SHMT1-206ENST00000579558 A6NJR5 290 aa27.53■■■□□ 2
SHMT1-206ENST00000579558 USP17L6PQ6QN14 398 aa27.53■■■□□ 2
SHMT1-206ENST00000579558 HEATR3Q7Z4Q2 680 aa27.53■■■□□ 2
SHMT1-206ENST00000579558 MTG1Q9BT17 334 aaPredicted RBP27.53■■■□□ 2
SHMT1-206ENST00000579558 DDX41Q9UJV9 622 aaKnown RBP27.53■■■□□ 2
SHMT1-206ENST00000579558 FRMPD4Q14CM0 1322 aa27.52■■■□□ 2
SHMT1-206ENST00000579558 PIK3CDO00329 1044 aa27.52■■■□□ 2
SHMT1-206ENST00000579558 KPNA6O60684 536 aa27.52■■■□□ 2
SHMT1-206ENST00000579558 ITGB8P26012 769 aa27.52■■■□□ 2
SHMT1-206ENST00000579558 METAP2P50579 478 aaKnown RBP eCLIP27.52■■■□□ 2
SHMT1-206ENST00000579558 ARHGAP1Q07960 439 aa27.52■■■□□ 2
SHMT1-206ENST00000579558 GPKOWQ92917 476 aaPredicted RBP eCLIP27.52■■■□□ 2
SHMT1-206ENST00000579558 SEZ6LQ9BYH1 1024 aa27.52■■■□□ 2
SHMT1-206ENST00000579558 PSTPIP2Q9H939 334 aa27.52■■■□□ 2
SHMT1-206ENST00000579558 TBX21Q9UL17 535 aa27.52■■■□□ 2
SHMT1-206ENST00000579558 MEIS2O14770 477 aa27.51■■□□□ 1.99
SHMT1-206ENST00000579558 RGS20O76081 388 aa27.51■■□□□ 1.99
SHMT1-206ENST00000579558 CDC27P30260 824 aa27.51■■□□□ 1.99
SHMT1-206ENST00000579558 FUT2Q10981 343 aa27.51■■□□□ 1.99
SHMT1-206ENST00000579558 FBXL16Q8N461 479 aa27.51■■□□□ 1.99
SHMT1-206ENST00000579558 AFG1LQ8WV93 481 aa27.51■■□□□ 1.99
SHMT1-206ENST00000579558 ZFP91Q96JP5 570 aaPredicted RBP27.51■■□□□ 1.99
SHMT1-206ENST00000579558 FAM217BQ9NTX9 383 aaPredicted RBP27.51■■□□□ 1.99
SHMT1-206ENST00000579558 KCNV1Q6PIU1 500 aa27.5■■□□□ 1.99
SHMT1-206ENST00000579558 V9GY48 417 aaPredicted RBP27.5■■□□□ 1.99
SHMT1-206ENST00000579558 CCDC196A0A1B0GTZ2 297 aa27.49■■□□□ 1.99
SHMT1-206ENST00000579558 CD4P01730 458 aa27.49■■□□□ 1.99
SHMT1-206ENST00000579558 MMP3P08254 477 aa27.49■■□□□ 1.99
SHMT1-206ENST00000579558 WWC2Q6AWC2 1192 aa27.49■■□□□ 1.99
SHMT1-206ENST00000579558 RUFY3Q7L099 469 aa27.49■■□□□ 1.99
SHMT1-206ENST00000579558 AGXT2Q9BYV1 514 aa27.49■■□□□ 1.99
SHMT1-206ENST00000579558 ADD1P35611 737 aaKnown RBP27.48■■□□□ 1.99
SHMT1-206ENST00000579558 DHX37Q8IY37 1157 aaKnown RBP27.48■■□□□ 1.99
SHMT1-206ENST00000579558 ZSWIM6Q9HCJ5 1215 aa27.48■■□□□ 1.99
SHMT1-206ENST00000579558 SCN10AQ9Y5Y9 1956 aa27.48■■□□□ 1.99
SHMT1-206ENST00000579558 SOX1O00570 391 aaPredicted RBP27.47■■□□□ 1.99
SHMT1-206ENST00000579558 STAM2O75886 525 aa27.47■■□□□ 1.99
SHMT1-206ENST00000579558 TIMP1P01033 207 aa27.47■■□□□ 1.99
SHMT1-206ENST00000579558 MRPS9P82933 396 aaKnown RBP27.47■■□□□ 1.99
SHMT1-206ENST00000579558 LAMC2Q13753 1193 aa27.47■■□□□ 1.99
SHMT1-206ENST00000579558 UBE2SQ16763 222 aa27.47■■□□□ 1.99
SHMT1-206ENST00000579558 GNPTABQ3T906 1256 aa27.47■■□□□ 1.99
SHMT1-206ENST00000579558 EMID1Q96A84 441 aaPredicted RBP27.47■■□□□ 1.99
SHMT1-206ENST00000579558 CYP46A1Q9Y6A2 500 aa27.47■■□□□ 1.99
SHMT1-206ENST00000579558 MYH7BA7E2Y1 1941 aa27.47■■□□□ 1.99
SHMT1-206ENST00000579558 NID2Q14112 1375 aa27.47■■□□□ 1.99
SHMT1-206ENST00000579558 B4GALT4O60513 344 aa27.46■■□□□ 1.99
SHMT1-206ENST00000579558 TGFB3P10600 412 aa27.46■■□□□ 1.99
SHMT1-206ENST00000579558 NAPAP54920 295 aa27.46■■□□□ 1.99
SHMT1-206ENST00000579558 NBPF20Q3BBV1 942 aa27.46■■□□□ 1.99
SHMT1-206ENST00000579558 LRIT3Q3SXY7 679 aa27.46■■□□□ 1.99
SHMT1-206ENST00000579558 TRPV6Q9H1D0 765 aa27.46■■□□□ 1.99
SHMT1-206ENST00000579558 ALDH8A1Q9H2A2 487 aaPredicted RBP27.46■■□□□ 1.99
SHMT1-206ENST00000579558 hCG_1984214I3L0E3 225 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 SORBS3O60504 671 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 GGPS1O95749 300 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 UBA1P22314 1058 aaKnown RBP27.45■■□□□ 1.98
SHMT1-206ENST00000579558 FPGSQ05932 587 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 DGKDQ16760 1214 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 FAM47CQ5HY64 1035 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 PCNX4Q63HM2 1172 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 PPP1R18Q6NYC8 613 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 XRRA1Q6P2D8 792 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 ZNF713Q8N859 430 aaPredicted RBP27.45■■□□□ 1.98
SHMT1-206ENST00000579558 PPTC7Q8NI37 304 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 INPP4AQ96PE3 977 aaPredicted RBP27.45■■□□□ 1.98
SHMT1-206ENST00000579558 PPP1R12CQ9BZL4 782 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 TM6SF1Q9BZW5 370 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 RTEL1Q9NZ71 1219 aa27.45■■□□□ 1.98
SHMT1-206ENST00000579558 LAMA3Q16787 3333 aa27.44■■□□□ 1.98
SHMT1-206ENST00000579558 SPDYE3A6NKU9 549 aa27.44■■□□□ 1.98
SHMT1-206ENST00000579558 CHMP4BP1P59074 171 aa27.44■■□□□ 1.98
SHMT1-206ENST00000579558 SP2Q02086 613 aa27.44■■□□□ 1.98
SHMT1-206ENST00000579558 CELF3Q5SZQ8 465 aaKnown RBP27.44■■□□□ 1.98
SHMT1-206ENST00000579558 TYW1BQ6NUM6 668 aa27.44■■□□□ 1.98
SHMT1-206ENST00000579558 LRCH3Q96II8 777 aa27.44■■□□□ 1.98
SHMT1-206ENST00000579558 UPF3BQ9BZI7 483 aaKnown RBP27.44■■□□□ 1.98
SHMT1-206ENST00000579558 STXBP3O00186 592 aa27.43■■□□□ 1.98
SHMT1-206ENST00000579558 ICAM3P32942 547 aa27.43■■□□□ 1.98
SHMT1-206ENST00000579558 TOB2Q14106 344 aaPredicted RBP27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms